| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4105 |
|---|
| Symbol | |
|---|
| ID | 5211088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 5145596 |
|---|
| End bp | 5146366 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640597693 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001278399 |
|---|
| Protein GI | 148658194 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACCG ATATTGTTCT CGAAACTCGC AGCCTGACCA AAGCCTTTGG TGCGCTGGTA
GCGGTGGATC GTGTGAGTAT CAGGGTTCGC AGACGTTCGC TGCATGCCAT TATCGGTCCC
AACGGCGCGG GGAAAACCAC GCTGTTCAAC CTGTTGAGCG GCAACCTGGA ACCGACCAGC
GGACAGGTTC TGTTCAAGGG GCGCGACATC ACCCGTCAGC CAGTCCACCG AACCATTCAT
CTGGGCATCG GTCGTTCTTT CCAGATTACC AACATCTTTC CCAATCTCAC CGTTTTCGAG
AACATCCGTC TGGCAGCGCA GGCGACGGGC GGCGACAACT TCAAGTTCTG GCGTCCAGCA
GCGCATTTCA AAAGGTATGA AGCGCGCGCC TGGGAGGTGA TCGAGAAGGT GGGGCTGAAA
GAACGCGCAT TCGCACCGGC GCGCACCCTG CCGCATGGCG ATCAGCGCAA ACTGGAACTG
GGCATGATCC TGGCGCCTGA TCCGGAGGTG CTGCTGCTCG ACGAACCGAC CGCCGGAATG
GCCGCCGAAC AGGTGCCCGA ACTGATTGCG CTCATCCAGG ACATTCAGCG CAGTGGCGAG
AAAACCGTCA TGCTGGTGGA ACACAACATG AACGTGGTGA TGAGCGTTTC CGATACCATT
ACGGTGATGC ATCAGGGGCG CGTGCTTGCC GAAGGAACGC CTGCTGAAAT CGCGGCGAAT
GAAGAAGTGC AAACTGCCTA TCTGGGTGGA CTGTATCAGT TGAGCATGTA A
|
|---|
| Protein sequence | MDTDIVLETR SLTKAFGALV AVDRVSIRVR RRSLHAIIGP NGAGKTTLFN LLSGNLEPTS
GQVLFKGRDI TRQPVHRTIH LGIGRSFQIT NIFPNLTVFE NIRLAAQATG GDNFKFWRPA
AHFKRYEARA WEVIEKVGLK ERAFAPARTL PHGDQRKLEL GMILAPDPEV LLLDEPTAGM
AAEQVPELIA LIQDIQRSGE KTVMLVEHNM NVVMSVSDTI TVMHQGRVLA EGTPAEIAAN
EEVQTAYLGG LYQLSM
|
|---|
| |