Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_4028 |
Symbol | |
ID | 5211011 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 5044069 |
End bp | 5044947 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640597617 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001278323 |
Protein GI | 148658118 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.251041 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACCAGA AACCTATCTG TCTCATCACC GGTGCGACGT CGGGCATTGG CGAAGTGACC GCGCGTGAAC TGGCGCGCCG GGGAATGCAT GTTGTCATCG TCGGGCGCAG CGCGGAGCGG GTTGCTGCGA CGGTTGCGCG CATCAAACAG GCGACCGGCG TTGAGATCGA GACGCTGATC GCCGATCTGT CATCACAGGC TGGTGTCCGT TCGGTTGCGG AAGCATTTTT GCAACGGCAT CGACGCCTTG ATGTGCTGAT CAATAATGCG GGCGGTTTTT TCGCCTCGCG CCAGGTCAGC GCCGATGGCA TCGAACTGAC ATGGGCGCTG AATCATATGA GCTACTTTCT GTTGACCAAT CTGTTGATCG ACACTCTGCG CGCCAGCGCG CCAGCACGGG TGATCAACGT CTCATCAGAC GCGCACCGCG GCGGCGTCAT GCGCTGGGAT GACCTCCTGT TCACCCGCGG CTACAATGGC TGGGCGGCTT ATGCACAGTC AAAACTGGCG AATATCCTCT TCTCGAACGA ACTGGCACGT CGTCTGGAAG GCACAGGCGT GACCTCGAAC GCGCTCCATC CCGGATTTGT GGCCACCCGT TTCGCACATA ACAATGGTAT CATCTGGGGC GGGTTGATGG CGCTGATGCA GCGCCTGTTC GCTATCACTC CAGAAGAAGG TGCGCAAACG TCGATCTACC TGGCTACAGC GCCTGAGGTT GCGGCAATCA GCGGCAGGTA TTTTGTCAAA TCACGCGAGA CTTCGCCCGC GCCGCAGGCG CAGGACATGG CAGCAGCGGC GCGTTTGTGG GAGATAAGCG AGCGCATGCT CGTCAACTCT GCGCCAGTTC TTCAAGGCGG CGCACATTCA CCAGCGTAA
|
Protein sequence | MNQKPICLIT GATSGIGEVT ARELARRGMH VVIVGRSAER VAATVARIKQ ATGVEIETLI ADLSSQAGVR SVAEAFLQRH RRLDVLINNA GGFFASRQVS ADGIELTWAL NHMSYFLLTN LLIDTLRASA PARVINVSSD AHRGGVMRWD DLLFTRGYNG WAAYAQSKLA NILFSNELAR RLEGTGVTSN ALHPGFVATR FAHNNGIIWG GLMALMQRLF AITPEEGAQT SIYLATAPEV AAISGRYFVK SRETSPAPQA QDMAAAARLW EISERMLVNS APVLQGGAHS PA
|
| |