| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3983 |
|---|
| Symbol | |
|---|
| ID | 5210966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 4984674 |
|---|
| End bp | 4985648 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640597574 |
|---|
| Product | protein-export membrane protein SecF |
|---|
| Protein accession | YP_001278280 |
|---|
| Protein GI | 148658075 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.586193 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.975855 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAC TCGTCAAACT CCGCTACTGG TGGTTTGCGC TCTCGCTGGT GATTATTATT
CCTGGATTGG TGTCGCTGGC GATCTTCGGG TTGCGCCTGG GCATCGATTT CAGTGGAGGC
GCGTTATGGG ATATCCAGTT CGTCGAACGC GCGCCGGGTC AACTCGATAC TGAGCGGATT
CGCGCCATCT TTGCAGCGCA AGGGTTCGAG GGCGCCCTGG TGCAGTTGAC CGAGTCGCAG
GTTGATGGGC GTACGGTCGC CAGCGCTGTG GTGCGCACCC GTTCGCTGAG CGAAACCGAT
CCGGAAACGC AGCGGCAGCG CGTGCTCAGT GCGCTCAGCG CAGAGTATGG GACGGTCAAT
CAGCAGGCGC TGCAATCTGT CGGTGCTACG GTGAGCGCCG AATCGACCCG CAGTGCAGTG
ATTGCGGTGA TCGCAGCGTG TGTGGCGATT CTGGTCTATC TGACGCTGGC TTTCCGCCGC
GCGCCGCATC CGGTGCGTTA TGGCATCTGC GCCATCCTGG CGATGATCCA CGATGTGCTG
CTGGTGCTGG GTGTTGCGTC GATCCTGGGG GTGGTGATCG GCATGGAGGT GGATGCGCTG
TTTCTGACGG CGCTCCTGAC GGTGATCAGT TTCTCGGTGC ACGACACGAT CGTGGTGTTT
GACCGCATCC GCGAGAATCT GGTAAATCGC CGCCCAACCG AAACCTTCGA CGATATTGTC
AATCACAGTA TTGTTCAAAC ACTGCCGCGT TCGGTCAATA CGCAGTTGAC GACATTCTTT
ACACTGATGG CGCTGATCCT CTTTGGTGGC GAGTCGATCC GCAATCTGGT GCTGATCCTG
CTGATCGGGC TGGTCAGTGG CACCTACTCG TCGATCTTCA ACGCGGCGCA GTTGCTTGTG
GTGTGGGAGA ACCGCGAGTG GAGCCGCTGG TTCCGCCGGA GCGCTCCGCC AGGCGCGGAA
GCGCCAGCGG CGTAG
|
|---|
| Protein sequence | MDKLVKLRYW WFALSLVIII PGLVSLAIFG LRLGIDFSGG ALWDIQFVER APGQLDTERI
RAIFAAQGFE GALVQLTESQ VDGRTVASAV VRTRSLSETD PETQRQRVLS ALSAEYGTVN
QQALQSVGAT VSAESTRSAV IAVIAACVAI LVYLTLAFRR APHPVRYGIC AILAMIHDVL
LVLGVASILG VVIGMEVDAL FLTALLTVIS FSVHDTIVVF DRIRENLVNR RPTETFDDIV
NHSIVQTLPR SVNTQLTTFF TLMALILFGG ESIRNLVLIL LIGLVSGTYS SIFNAAQLLV
VWENREWSRW FRRSAPPGAE APAA
|
|---|
| |