| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3839 |
|---|
| Symbol | |
|---|
| ID | 5210821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 4798103 |
|---|
| End bp | 4799083 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640597435 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001278143 |
|---|
| Protein GI | 148657938 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000120659 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAACGGTC GTGTGATCAG GCGGGTGTCG GTAGCGAAGC GGGTCGTGGC ATGCGTGGCG
CTCGCCATAC TCCTCACGGC ATGCGCCGAA CCGCTGGTCG AACCGCGTCC GCCGCGCACG
CCGACAGCGG TGATCGACCG GTACAACGCC ATCGTTGCGA CTGCTGAGGC GGGCGATGAT
CTGTTGGCGC GCGCCACAGC CTACTATGAG CGCGGCAACG TCTGGTTCGA TCAGCAGAAC
TACACCGCCG CCATTGCCGA CTACGATCGG GCGCTCGCGC TCGACCCCTC TCTGTCGCGC
GCTGTTCACA ATCGTGGTCT GGCGTATGCA CTGTTGGGGG ACGACAACGC CGCGCTGCGG
GATTATGCCG AGGCTATTCG TCTCGATCCC GCCTACCGGC GCGCCTACGA GAATCGGGTG
CGCCTGCTGG AACAACTTGT CGTTGAGAGG ACAGACGAGA CGCTGCTGCA ACAACTGGCG
GACGACTACG GCAAACTCGC GGAACTGATA CCTGAAGCAG AAGCGATGTA CCGGTATCGA
CAGGGGGTAA TCCTGGCGCG GCTGGGTGAC CGATTGGCGG CGCGTGAAGC GTTCGACGCT
GCACTCCGCG CCCGACCGCA GCACGTCGAT GCGCTCTACG AACGCGCACT GTTGCACTAC
GCCGACGGCG ACCTGAATGC CGCCCTCGCT GACCTCGACG CCGCGCTGCG TCTGAGTCCC
CGCGCTGCCA ACGCCTACTA TGTGCGCGGA TTGATCCGCC ACGCTCAGGG AGACATACGC
AGCGCAATCG CCGATTTCGG TCAGGCGCTG GTGCTCCAGC CCGAATACCC CGAAGCGCTC
ATTGCACGGG CAGCGGCATA CGCGGCGCAG GGCAACACCG CTGCCGCCCG CGCCGACCTC
CAGCGCCTCG ATGGATTGAC GCTTGACCCG ACGCTTCAGC AGGCACGCGA GGCGCTGCGG
GTGCAGACAG ATTCGCCCTG A
|
|---|
| Protein sequence | MNGRVIRRVS VAKRVVACVA LAILLTACAE PLVEPRPPRT PTAVIDRYNA IVATAEAGDD
LLARATAYYE RGNVWFDQQN YTAAIADYDR ALALDPSLSR AVHNRGLAYA LLGDDNAALR
DYAEAIRLDP AYRRAYENRV RLLEQLVVER TDETLLQQLA DDYGKLAELI PEAEAMYRYR
QGVILARLGD RLAAREAFDA ALRARPQHVD ALYERALLHY ADGDLNAALA DLDAALRLSP
RAANAYYVRG LIRHAQGDIR SAIADFGQAL VLQPEYPEAL IARAAAYAAQ GNTAAARADL
QRLDGLTLDP TLQQAREALR VQTDSP
|
|---|
| |