Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_3352 |
Symbol | |
ID | 5210329 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 4202967 |
End bp | 4204382 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640596950 |
Product | type II secretion system protein E |
Protein accession | YP_001277663 |
Protein GI | 148657458 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.695645 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGGT TTCGTTTCTC GCGAAGCGGC GCCAGCAATG CACACCAGGC GCCCAACGCC ACCCCCGTCG ATGAACCGCG CCCGCCGATT GAGCCGGTGC GACCGGTCGT AGCGCGGTCG TCGGTTCCTC CGACCGCACA CGATGCCGAT CGCGATGAAC GCGATCTGAT CGAAGTGGTT CAGTCAAAGT TGATCGATGA GACTGATACG AGCGGGCGCC GTGAACCGGA GTACTACGCG CGCCGTATCG CGGAACTGGT GACCGAGCAC CTCGACAGGA GCGGTCGCGT AGTTTCCGAA CGGGAACGCA TGCGTCTGAT CCGCCTGGCG CAGTCCGAAC TGCTTGGACT CGGTCCACTC GAACCGTTGC TCGCCGACGA TACGATTAGC GAGATCATGG TCAACGGTCC ATACCAGATC TGGGTCGAGC GCAACGGCAA ATTGCAGGAA ACCGACGCCC GTTTTATCGA CGAAGACCAT GTGCGGCGCA TCATTGATCG CATTATCTCA CCGCTCGGTC GTCGGTGCGA TGAGACGACG CCGATGGTCG ACGCGCGTCT GCCGGACGGG TCGCGCGTCA ACGCCATCAT TCCGCCGCTG GCGCTCAATG GCAGCACGAT CACGATCCGC AAGTTCTCGC GTGTTCCGCT CACCGCTGCC GATCTGGTGG CGCGTGGCGC TGCGTCGCCA GAGTTGATGG ACCTGCTGCG AGCATGTGTG CTGGGACGGC TCAACTGCAT CATTTCCGGC GGCACCGGCA CCGGCAAGAC CACCATGCTC AATGTGCTCT CATCGTTCAT CCCCGACGAT GAGCGCATCA TCACCATCGA AAACGCTGCC GAACTGCAAC TACAACAGCG TCATGTCGTG ACGCTCGAGT CACGTCCCGC CAATATCGAA GGGCGCGGCG AGGTGACGCT GCGTGATCTG GTCGTGAATG CCCTGCGTAT GCGCCCGGAT CGGATTATCG TCGGCGAGTG TCGCGCGGGT GAGGCGCTCG ATATGCTTCA GGCAATGAAC ACCGGTCACG ACGGTTCGAT GACGACGCTG CACGCCAACA GTCCGCGTGA TGCGCTGCGC CGCATGGAGA CGATGGTCAT GATGGCGGGG ATGGACCTGC CGCTGCGCGC GATCCGCGAA CAGATCGCTT CGGCGATCAA TATCATCATT CAACTTGAAC GTCTCCAGGA CGGCTCACGC AAGATCGTGC AGGTCTGTGA AGTGACTGGC ATGGAGAATG ATGTCGTCTC GCTCTCCGAT CTGTTCGTGT TCCAGCAACA GGGCGTGCGT GACGGCAGGG TCGTCGGTCG AATCGTGCCG ACAGGTATTC GCCCGCGCTT CCTCGAGAAG TTGCAGCAGA TGAACATCAC GTTGTCGCCC CAGGTGTTTG GCAATGTTAT TCCAGGCGTT CGCTAG
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Protein sequence | MNRFRFSRSG ASNAHQAPNA TPVDEPRPPI EPVRPVVARS SVPPTAHDAD RDERDLIEVV QSKLIDETDT SGRREPEYYA RRIAELVTEH LDRSGRVVSE RERMRLIRLA QSELLGLGPL EPLLADDTIS EIMVNGPYQI WVERNGKLQE TDARFIDEDH VRRIIDRIIS PLGRRCDETT PMVDARLPDG SRVNAIIPPL ALNGSTITIR KFSRVPLTAA DLVARGAASP ELMDLLRACV LGRLNCIISG GTGTGKTTML NVLSSFIPDD ERIITIENAA ELQLQQRHVV TLESRPANIE GRGEVTLRDL VVNALRMRPD RIIVGECRAG EALDMLQAMN TGHDGSMTTL HANSPRDALR RMETMVMMAG MDLPLRAIRE QIASAINIII QLERLQDGSR KIVQVCEVTG MENDVVSLSD LFVFQQQGVR DGRVVGRIVP TGIRPRFLEK LQQMNITLSP QVFGNVIPGV R
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