Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_3145 |
Symbol | |
ID | 5210115 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 3955765 |
End bp | 3957372 |
Gene Length | 1608 bp |
Protein Length | 535 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640596736 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001277456 |
Protein GI | 148657251 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.61705 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCACAC TGCACCAGAA TCGCAACATG TCGCAGTCTG TCGTTCTGAT CACCGGCGCA ACGGACGGCA TCGGTCGGGC GCTGACGCAG ATCTATCGTG CGCGCGGGGC GCGGGTGCTC GGTATCGGGC GGCGCCCGGC GGAAGAGGTG TCGCCAGATC TGCGCAGTGA CTATTGTCGT GTTGATCTGG CGCAACCGTT CGCTTCCGCG CTGGTTGCCG ACGTTCTGCG GCAACGAGGC GTCGCCCGCC TTGATCGGCT CATCCACTGC GCCGGGATCG GCTCATACGG CGCGGTCGAT GATCAGACGC CGGAAGCGAT CGATGCGCTG CTGGACGTGA ACCTGCGCGC GCCGATTGCG CTCACCCACG CGCTGCTTCC GCTTCTGATC GCAGCACACG GACACGTGAC GTTTATCGGG TCGATAGCGG CAGCATTGCC CGCACCCAAC TACGCAGTGT ATGGCGCAAC CAAAGCGGCG CTGGAAGGGT TTGCCCGCAG CCTGCGCGAA GAACTGCGCG GACGGGTCGG GGTTCAGATT GTGCATCCAG GCGCCACACG CACCGGCATG CACGCAAAAT CCGGCGTGCC GCCCGACCGC GTCAATGCGC GTCGCTTTCC ATCACCCATG TGGACGGCGG AGCGGATCGT GCGTGCTATC GAGCGGAACG CCGCAGTAAC GACGATTGGA TCGGTCAATC GCCTGCTGCG TCGTGTCGGC AGGCATGCGG GCGAAATTGC GGACGCGGTT GCCGCTCGCC AGGTGGTCGC ACCGCACCAT ACGATTGGCG ATACGACCCA TCCGCCAGGG ATGCTTTCCA CTGGCGGTCG GCGGCACTGT GTTGTGACCG GCGGCGCAAA TGGGATCGGA CGCGCAGTTG TCGAACGGTA TGCGCGTGAC GGTTGGCTGG TGACGATCAT CGACCGTGAA GCGCCGCAGA TCAACCGCAC CGTTCAGGAT GCCACGACAT TCATCCAGGC TGATCTTGCA CATTCAGAAG GGATCGACCG GGCGTTACGC CATCTCGCCG CGCTTCCCGC CGCCGACGTT GTGGTGCAGA GCGCCGGAAT CAATGCGGTT GGCGCGTTTG CAGCCAGTGC CATCGATGAA CAACTGACCG TGATCGATGT CAACCTGCGC GCGCCGCTCC ACCTGACCGC CGGACTGCTG CGTTTCGCAC TGCTGGCGCC CCGCGCGACT CTCGTCTTTA TCGCGTCGCT ATCAGTCTAC ACTGGTTACC CCGGAGCGGC AGTCTACGCA GCAAGCAAAG ATGGTTTGTC TTCATATGCG CGCAGTTTGC GGGTGGCGCT GGCGCAGCGG CATATGAACG TAATAACGGT GTACCCCGGA CCGACGCGCA CCGCCCATGC GCGGCGCTAC AGTCCCGACA ACCGGCGCGA GAGTCGTCGG ATGGCGCCGG AACGTGTGGC GGCGTGCATC GCAACTGCTG TCGAACGGCG TCGCGCCAGG GTGATTCCGG GCATAACCAA CCAGGCGATT GCACTGATCG GAAGCGTGGC GCCGACGCTG ACCATGTATG CCATGCGGAA AACGCTCTTC GAGCGTCTGG AAGCCGTATC CGGCGATGTG AAGGCGGGGC GACCATGA
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Protein sequence | MVTLHQNRNM SQSVVLITGA TDGIGRALTQ IYRARGARVL GIGRRPAEEV SPDLRSDYCR VDLAQPFASA LVADVLRQRG VARLDRLIHC AGIGSYGAVD DQTPEAIDAL LDVNLRAPIA LTHALLPLLI AAHGHVTFIG SIAAALPAPN YAVYGATKAA LEGFARSLRE ELRGRVGVQI VHPGATRTGM HAKSGVPPDR VNARRFPSPM WTAERIVRAI ERNAAVTTIG SVNRLLRRVG RHAGEIADAV AARQVVAPHH TIGDTTHPPG MLSTGGRRHC VVTGGANGIG RAVVERYARD GWLVTIIDRE APQINRTVQD ATTFIQADLA HSEGIDRALR HLAALPAADV VVQSAGINAV GAFAASAIDE QLTVIDVNLR APLHLTAGLL RFALLAPRAT LVFIASLSVY TGYPGAAVYA ASKDGLSSYA RSLRVALAQR HMNVITVYPG PTRTAHARRY SPDNRRESRR MAPERVAACI ATAVERRRAR VIPGITNQAI ALIGSVAPTL TMYAMRKTLF ERLEAVSGDV KAGRP
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