| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2731 |
|---|
| Symbol | |
|---|
| ID | 5209700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 3394142 |
|---|
| End bp | 3396331 |
|---|
| Gene Length | 2190 bp |
|---|
| Protein Length | 729 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640596331 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001277053 |
|---|
| Protein GI | 148656848 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.550366 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACT CAACGCGCTT CCGCCATGTC CATTATGGTT GGGACGCCGC CTATGCCGCC
ACACTCGATC TGGTCGGTCG TCTGGTGTAT CGTTCTAACC TGTTGGGAAG CGATCAGCGC
ATCACAAACA CCGGCGGCGG GAACACGTCC GCCAAGATAA CCGGGCGCGA TCCATTGACC
GGCGAGCCGG TCGATGTGTT GTGGGTGAAG GGTTCGGGCG GCGATCTCCG CACCAGCACG
CGCGCCAATT TTGCATCGCT GGACCTGGGA AAACTGCACA CCCTGCGCTC TATCTATCTG
CGCGACCCGG CACGCGGACC GAAGTCTGCA ATCGAAGATG CGATGGTCGA TCTCTACCCA
CACTGCACCT TCAACCTCAA TCCACGCGCT TCTTCGATTG ATACGCCGCT CCATGCGTTC
ATTCCCTACC GCCATGTCGA TCACATGCAC CCGAATGCGG TCATCGCAAT TGCCGCTGCA
CGCCACGGTG AGCGTCTGAC GCGCGAGATT TATGGCGATG AGGTCATCTG GACGCCGTGG
CAGCGCCCCG GTTTCGATCT TGGATTGACA CTCGAACGCA TCTGCCGCGA GCATCCGCAG
GCGAAAGGCG TTCTTCTCGG CGGTCACGGG CTGATCAACT GGGCGGATGA CGATCAGGAG
TGCTACGAGC GCACGCTCGA CCTGATCGAG CGTGCGGCGC GCTATATCGA AGCGCACGAC
CGGGGTGAAG CAACATTTGG CGGACCGAAG TATGCCGCCC TGCCGTTCGA CCAGCGGCGC
GCGATCTTCG CACGCATTCT GCCCTGGTTG CGGGGACAGA TCAGCCAGCA GCGTCGGTTC
ATTGCGACCA TTCAGGATGA TGACGCCACT CTGCGCTTTG TCAACAGCGT CGATGCCCCG
CGCCTGGCTG AACTGGGCAC AAGTTGCCCC GACCACTTCC TGCGCACCAA GATCAAGCCA
CTCTATGTCG ACTGGAACCC GCACAGCGAG ACCATTGATG ATCTGAAACG CAAGCTGTCC
TCCGGGCTTG AGCGGTATCG CGCCGATTAC GCCCGCTACT ACGAAACCTT CCGCCGACCC
GACTCGCCGC CGATGCGCGA TCCCAATCCG ACGGTCATCC TCATCCCTGG CTTGGGGATG
ATCGCCTGGG GCAAGGACAA GAGCGAGTCG CGGGTGACGG CGGAGTTTTA CACGGCTGCC
ATCGAAGTGA TGCGCGGCGC GGAGGCGATT GACGAGTATA CCGCATTGCC GCTGCAAGAA
GCGTTCGACA TCGAATACTG GCGCCTGGAA GAGGCAAAAC TGCGCCGGAT GCCGCCGGAG
AAGGAACTGG CGCGCCAGGT GATCGCCGTT GTCGGGAGCG GCAGCGGTAT TGGACGCGAA
GTGGCGCTGC GTCTGGCAAA CGAAGGTGCG CACATCGTCT GTGTCGATAA AGATGGCGCG
GCAGCGCAGG CGACCGCGCA GATGATAATC GAACGGCATG GCATGGGGAT CGGGGTTGCT
GGCAGTGACA TTTCCGCCTG CGGACCGGCG ATTGGGCTGA CTGCCGACAT TACTGATCGC
GCCAGTGTGC AGGCGATGAT CCAGCAACTG CTGCTTGCCT ATGGCGGGCT TGACGCTGTT
GCCGTCACTG CTGGCATTTT CGTCGCACCC GATGCCAGCG GGCGCATCCA CGATGAGCAC
TGGGGGTTGA CCTTTGCCAT CAACGTTACC GGGCACTACA TCGTTGCCGA CGAAGCAGCG
GCGATCTGGC GCGCACAGGG CTTGCCCGCC AGTCTGGTGC TGACCACCTC GGTCAATGCG
GTGGTGGCAA AGAAGGGATC ACTGGCTTAC GACGCCAGCA AAGCGGCAGC CAACCATCTC
ATCCGCGAAC TGGCTATCGA ACTGGCGCCG CTGGTACGGG TCAACGGTGT CGCTCCGGCA
ACCGTCGTGC AGGGGAGCGG TATGTTCCCC CGCGAACGGG TGATCGCCTC ACTCACAAAG
TATGGCATCC CCTTCGCACC AGATGAACCA ACCGAGTCGC TGACGGCAAA ACTGGCTCAG
TTCTACGCCG ATCGTTCGCT CCTTAAGCGA CCAGTGACGC CAGCCGATCA GGCGGAAGCG
TTCTTCCTCC TGCTCACCCG GCGTCTGGGG CAAACGACTG GACAGATCAT CACGGTTGAT
GGCGGATTGC ATGAGGCATT CCTGCGCTGA
|
|---|
| Protein sequence | MSNSTRFRHV HYGWDAAYAA TLDLVGRLVY RSNLLGSDQR ITNTGGGNTS AKITGRDPLT
GEPVDVLWVK GSGGDLRTST RANFASLDLG KLHTLRSIYL RDPARGPKSA IEDAMVDLYP
HCTFNLNPRA SSIDTPLHAF IPYRHVDHMH PNAVIAIAAA RHGERLTREI YGDEVIWTPW
QRPGFDLGLT LERICREHPQ AKGVLLGGHG LINWADDDQE CYERTLDLIE RAARYIEAHD
RGEATFGGPK YAALPFDQRR AIFARILPWL RGQISQQRRF IATIQDDDAT LRFVNSVDAP
RLAELGTSCP DHFLRTKIKP LYVDWNPHSE TIDDLKRKLS SGLERYRADY ARYYETFRRP
DSPPMRDPNP TVILIPGLGM IAWGKDKSES RVTAEFYTAA IEVMRGAEAI DEYTALPLQE
AFDIEYWRLE EAKLRRMPPE KELARQVIAV VGSGSGIGRE VALRLANEGA HIVCVDKDGA
AAQATAQMII ERHGMGIGVA GSDISACGPA IGLTADITDR ASVQAMIQQL LLAYGGLDAV
AVTAGIFVAP DASGRIHDEH WGLTFAINVT GHYIVADEAA AIWRAQGLPA SLVLTTSVNA
VVAKKGSLAY DASKAAANHL IRELAIELAP LVRVNGVAPA TVVQGSGMFP RERVIASLTK
YGIPFAPDEP TESLTAKLAQ FYADRSLLKR PVTPADQAEA FFLLLTRRLG QTTGQIITVD
GGLHEAFLR
|
|---|
| |