| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2542 |
|---|
| Symbol | |
|---|
| ID | 5209511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 3143544 |
|---|
| End bp | 3145667 |
|---|
| Gene Length | 2124 bp |
|---|
| Protein Length | 707 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640596146 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001276868 |
|---|
| Protein GI | 148656663 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00750511 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGATCCTGG CGGCGCTGGC GCTTGCCGTC CCGACGTTCG CTGCCGCGAC ACTTGCTATC
CTGGACTATT TCGAGGGGTT TAGTTTTCGT TATTCGCTGA TTGAGCCGAA GATCGGACCT
GACCGCTTCA TCGGTCTGGA GGAGATCATC GGACTGACCG TGTTTCGCCT GACGACCGGC
GGCGCGCAAC CGCCGGCGCT GCTGGTCGGC GCTGCGGCGC TGGCGGCAGT GCTGCTTTGC
GTTGCAGGGC TGGCGCTGCC ATCGCGCGGC AGTGGCGCGT TTCGCTGGCG CTGGATACTC
GCGGGGGCGG CAATTACCGC AACGCTGTTC TGGTTGCGCT TTGGGAGACC GTATGAGTAC
GGTTTTATGA AAGGCGCCGC CTATACCACA TGTGTGCTGT GGGGGCTGGC AGCGCACGGG
ATCGAACGGC TCGTCGAACG CGCTCGCCGA ACCGACGCCG TGCTGGCTTC CGGCGCTGCG
TTTCTGATCC TGGTCTGCAC CGGTTGGGCG CAGGCGCTCA CGGTTGCTGA CCATATGCGC
GGACCGGCGA TCTTCACCCG CGATCTGGTG GCATTCGAAC CGATAGCAGC GCGCCTTCCG
CAAGGAGCGA AGGTGCTGCT GAGCGGTGAT GAGACCCTGA CCGGTCCGAT CAATGGGTTG
CTGGCAACGA TGCTGTACGG TAAGGAAATC TGGGGGCGTG TGCCTGCCGC GTATACCTCA
CAGTCCTCCT GGACTCCCGG CGGAACGCCG GACTATGTTG TGCTGGCAGC ACGCGAGGCG
CCGTGGCCCC TGGAGATCGG CGGACGGGAA CTGTGGCGCA GCAGCGTCGT TGCGCTGTAC
GATCTGCCGA CCGATGTCGT GTTCCTGCCG GGGCGCAGTG AGATTCATCG CAACACTCCG
GTCGATCCCA AATCGCCTGC CTCGCTGGCG ATCTGGCGTC GCGCCGGGCA CAACCGCATG
CTGACCCCTG AAGACCCTCT GAGCCTGAAC CTTACGCAGC GCACGACCAT TCATCTGAAG
CTGGCATCGC TGACACCGCA GCGCCTTCTG GTGCATGATG ACGAGAGTAC GCAGACGCTC
GCAGTGCAGG CGGGAATAAC GACTGTCGAA GCAACCGCTG GTTCGACGGT GCGGGTGATA
CCTGAAGCGC CGCTCGCGCT GATTTCTGCC GTTCTGCGTC CGGCGGTCTC TCCATCGCCG
CTGCCCGCCG CCGCTCTCGA CGCAACCCAG GGCGCATGGA GCGTCACTGC CGAACAACAG
GGCAATCATC AGTTGGTGAT CACCACGCGC CTGGCAAATC CAGGTCGGTA TGCACTGCGC
TACGAAGTGA CAATCATCGA AGACACGTTC AACGCGCCGC GGCGCATTGT GCGTGTGCTC
GGCGCTGCGC CGCTGGAAGG CGAGTGGCGT CTGGCGCTCG ACCTGGCGCG TGGTGCGTCC
GAGGCACGGA TGAACGGCAG TCCCACGCCG CTGCTGGAAG CGGAAGTCGC AGCGGCGCCA
CCCAACGGGC GCTACTTCGG CGTCCTGACG ATCTACAGCG GCGGTGCAGC GGTCGCTCAG
GCGCCAATCG TTGTGATAAG CGTTACAGAC GGCGCGATCA CCACCTTCGA GCCGGTGGCA
TTCTCGGTGG AAAGCGTCCG TGCCGGGTCT GAACCCCTTC CCCTGCCTGC CCACCGACGC
GCACTGCTTG ACGGAACGCC GCTGATATGC GATCCGTTAC GCATTGTGAT CGAACAGGCA
ATCCTTGAAC GACACGCGCC TCCTCCCGGC GTCACCCCCG ACATGCCGCT TGCTCCCGGC
GAACGCCTGA CCGTGCAGAT ATACTGGCGC GCAGCAGCGG ATCACGCTTC CTCTGCGGTG
ATGCCCATGG TGTCGGTGCA ACTGCTGGAT GATGAGTACC GCAAATGGGC GCAGTGGGAC
GGATTGACCG GCGGAGACTG GCGACCTGTG CCGGTGTGGA CGCCAGGGGA AGCCGTGCGC
CAGGATGTAC CGCTGACCCT CGATACCGCC ACGCCCCCTG GCGATTACCG CCTGATCCTG
GTGGTCTACG ATCTGGCGAC CGGTCGCCCG TTGCCGCTCG ATGGACAGGA CGCGGCGCCG
ATCGGGTGGG TGCGGGTACG TTAA
|
|---|
| Protein sequence | MILAALALAV PTFAAATLAI LDYFEGFSFR YSLIEPKIGP DRFIGLEEII GLTVFRLTTG
GAQPPALLVG AAALAAVLLC VAGLALPSRG SGAFRWRWIL AGAAITATLF WLRFGRPYEY
GFMKGAAYTT CVLWGLAAHG IERLVERARR TDAVLASGAA FLILVCTGWA QALTVADHMR
GPAIFTRDLV AFEPIAARLP QGAKVLLSGD ETLTGPINGL LATMLYGKEI WGRVPAAYTS
QSSWTPGGTP DYVVLAAREA PWPLEIGGRE LWRSSVVALY DLPTDVVFLP GRSEIHRNTP
VDPKSPASLA IWRRAGHNRM LTPEDPLSLN LTQRTTIHLK LASLTPQRLL VHDDESTQTL
AVQAGITTVE ATAGSTVRVI PEAPLALISA VLRPAVSPSP LPAAALDATQ GAWSVTAEQQ
GNHQLVITTR LANPGRYALR YEVTIIEDTF NAPRRIVRVL GAAPLEGEWR LALDLARGAS
EARMNGSPTP LLEAEVAAAP PNGRYFGVLT IYSGGAAVAQ APIVVISVTD GAITTFEPVA
FSVESVRAGS EPLPLPAHRR ALLDGTPLIC DPLRIVIEQA ILERHAPPPG VTPDMPLAPG
ERLTVQIYWR AAADHASSAV MPMVSVQLLD DEYRKWAQWD GLTGGDWRPV PVWTPGEAVR
QDVPLTLDTA TPPGDYRLIL VVYDLATGRP LPLDGQDAAP IGWVRVR
|
|---|
| |