Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_2304 |
Symbol | |
ID | 5209271 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 2845425 |
End bp | 2847464 |
Gene Length | 2040 bp |
Protein Length | 679 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640595909 |
Product | signal transduction histidine kinase, nitrogen specific, NtrB |
Protein accession | YP_001276633 |
Protein GI | 148656428 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGTCAC AGGTCCAAAA AGTCTCCGCC TCCACAGATA CTGTTCATGC CCATACCTTT CCGGTTGATG AGCGCATGCG CGTTTATGCA CATGTTTTCG AGGCGATTGG TCAACCGCTG ATCGTGACCG ATCTGACCGG TTCCATCGTG TACTGGAATG GGAGTGCAGC AACGGTCTTT GGCAAACGTC GGGACGAGAT GGTCGGTCGG TCGGTGATGG CGGTAGCGGA TGGTGACGAA TGGCGCTTGA AAATTACGCA TGTATTGGAA GAGGTTGGGC AGCGAGGTCA GTGGAATGGC GAATTGATGG TGCAGCGGAG TGATGGCGTA CAGGCGTCAG CGGTTGTCAA TGCGCGTCTC TGGCATCACG AGCGGGATCA GGACGCGATC GTCATTCTTG TGACCGGTAT CAACCGGCAA AAACGATCTG AGTCGTATAC GGGTCGACGA GTGATACGCA GGCGACGTCG GAACGCTGAT CTTCCGCGCC GCTTCAAACG TCGCCTGAGC GGGGTACGTC GCGCGAACCG TTGGTTGCGG CGCGAGATTG CTGAATACAG GCGCAATGAG CAAGAACTTC GTTTTCAGGC AAAACTGCTG GCGACTGTCA GCCAGGCGGT GCTTGCGACC GACACGTCGG GGGTGATTAC CTACTGGAGT CCATCCGCTG AGCGCATGTT CGGTTGGAGC GCTGCCGAGA TGATCGGTGC AATCGGGTTT TATCTGGTGG CTGGTCTGCC GGATCTTGAA CTTATTGGCG CAATGCGCGC GGCGATTGGC GCTGGCAAAC CGTGGGAAGG CGAATTTATG CTGAGACGCC GTGATGGTAC TGTTTTCCCT GCATATGCCG CGATTTCTCC GATCTTCGAT GAGCAGAATC GGCGTATCGG CGCAGTTGGC GTCGTCAGCG ACATAACTGA GCGAAAACGT GATCAGCAGG CGCTGGCGGA CGCCAATGTC CGTCTTCAGG CAGCCAACGC CGACCTGCAG TTGAGTCATG ACCTGTTACA CACGATTGTT GACAATCTGG ACGATGGGCT GGCATTGATC GATAGTCAGC GCGTTATTCA GGTGGTCAAT CGTCAGTTTG CACGCCTGCT CGAGATGCCG CCGGAACATC TTCCTGGCGC ATCGTGCGAT GATGTTTGCC CGGTGGTTGC GCCGATCGTC GCTCGCACCC TGAGTGGAGG CGTGAAGTCG TTCGAGCGCG TCTCTCATGC CCATCCATCG GGTGAGGTGA TAACCCTGGA TGTCTACGGT ATTCCATTGC GCGACGCGAG CGGCGCGCAG CGCGTGGTGC TGCGCCTGGT TGATGTGACT GAGCGGCTGC AACTCGAAGC GATCATGCGG CAGAACGAAC GCCTGGCGGC GAGCGGTCGC CTTGCGGCGG CAGTCGCGCA TGAGATCAAC ACGCCGTTGC AGTCCATCCA GAATTATCTG TACCTGCTGC GTTCATCGTC CATCGAGCAA TCGACAGCGT TTCTCGATCT GGCGAGCAGC GAGATAACGC GTGTCTCAAC GTTGTTGCAT CGCCTGCTCG ATCTCCATCG TCCCGGTGAT CGTTCGATCG AGCTGATCGA TAGCAATGCG ATCATTGAAC GGGTCGTCTT GTTGTTGGGA AGCGCCCTGC GTGGGTGCAG CATTCGCGTC GAACAGGAAC TGGCGCCGGA TCTGCCGCGG TTTTTAGGGC AGCGCGATGC GCTGATGCAG GTGTTGCTCA ACCTGCTGCT GAATGCGATC GACGCGATGC CGTGCGGTGG CGCCCTGCGC ATTACAACAC GTCGGGCGCT TGAAACCATC GATCAATCTG CACGCTGGTG CGTGCAGATT ATCGTCGCAG ATAACGGTCC TGGAATCGCA TTCGATCTGC AGGAACGAAT TTTTGATCCG TTCTTTACGA CAAAGCCACA CGGGTCGGGT CTTGGGCTGG CAGTCAGTCG TCAACTCGTT GAACAGCACG GTGGATCGTT GCGTGTACAG AGCACTCCTG GCAATGGCGC CACATTTATT GTCTCGCTGC CGGTTGCAGA GGATGCGTGA
|
Protein sequence | MPSQVQKVSA STDTVHAHTF PVDERMRVYA HVFEAIGQPL IVTDLTGSIV YWNGSAATVF GKRRDEMVGR SVMAVADGDE WRLKITHVLE EVGQRGQWNG ELMVQRSDGV QASAVVNARL WHHERDQDAI VILVTGINRQ KRSESYTGRR VIRRRRRNAD LPRRFKRRLS GVRRANRWLR REIAEYRRNE QELRFQAKLL ATVSQAVLAT DTSGVITYWS PSAERMFGWS AAEMIGAIGF YLVAGLPDLE LIGAMRAAIG AGKPWEGEFM LRRRDGTVFP AYAAISPIFD EQNRRIGAVG VVSDITERKR DQQALADANV RLQAANADLQ LSHDLLHTIV DNLDDGLALI DSQRVIQVVN RQFARLLEMP PEHLPGASCD DVCPVVAPIV ARTLSGGVKS FERVSHAHPS GEVITLDVYG IPLRDASGAQ RVVLRLVDVT ERLQLEAIMR QNERLAASGR LAAAVAHEIN TPLQSIQNYL YLLRSSSIEQ STAFLDLASS EITRVSTLLH RLLDLHRPGD RSIELIDSNA IIERVVLLLG SALRGCSIRV EQELAPDLPR FLGQRDALMQ VLLNLLLNAI DAMPCGGALR ITTRRALETI DQSARWCVQI IVADNGPGIA FDLQERIFDP FFTTKPHGSG LGLAVSRQLV EQHGGSLRVQ STPGNGATFI VSLPVAEDA
|
| |