Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_1998 |
Symbol | |
ID | 5208960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 2476726 |
End bp | 2478537 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640595605 |
Product | pepF/M3 family oligoendopeptidase |
Protein accession | YP_001276334 |
Protein GI | 148656129 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1164] Oligoendopeptidase F |
TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0556432 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACACTAT CAGTCAGTGA ACCACTGCCT CATTGGGATA TGACGGTCGT CTATCCCGCG CTCGATTCGC CGGAGTTCAA CCACGACCTT ACGGCGACAC GTCAGGCGTT CGACACGATG ACCTCGCTGT TCGACCGTCT GGGAATTAAC AGGCGCGACC GGCAATCGAC CGATGACGCT GCTGTCGCCG CATTCGAAAC GGTTGTTCCG GCGCTGAACG AACTGCTCGA ACAGTTCTCC ACCCAGCGCG CCTATGTCTA CAGTTTCGTG GCAACCGACT CACGGAACGA TCAGGCGCAG GCAACGTTCA GCATGCTGAT GCGGGAAGGG GTTCGGCTAA CAAAACTGTT GCGGCGATTG ACCGCCTGGC TTGGCGGGTT GGATGTCGAA ACGTTGATCC AGCGCTCGAC TATCGCGCGT GATCACGCCT ATCTGGTGCG CCGCGCCGCC GAAGAGGCGC GTCACCTGAT GTCGCCTGCC GAAGAGGAAC TTGCCGCAGA ACTGGACCTG TCGGGCGGTA TTGCCTGGGC ACGTATGTAC CAGAATCTGA CGTCGCAGAT ACTTGTGCCC ATCGAACGCG AGGGGCAGAC AGTCGAACTG CCGATGAGTC AGGTGCGCAA TCTGGCGCGC GACCCGGACC GGGCAGTGCG CCGCAGCGCG CACGAGGCGG AACTCGCAGC CTGGGAACGC GCAGCGTTGC CGCTCGCATC CGCGCTCAAC AGCATCAAAG GGCAGGTGCT CACCCTCAGT CGCCGTCGTC GGTGGGAATC GCCGCTCGAG GCATCGCTGT TCGACAATGG CATCGACCGC GCCACGCTCG ATGCCATGAT GACCACAGCG CGCGAGTTCT TTCCCGATTT TCGGCGCTAC CTGCGCGCCA AAGCCAGGCT CCTCGGTCTT GAACGCCTCG CCTGGTACGA TCTCTTCGCC CCGGTCGGCA GCGGTGGACG CAGCTGGCGC TTCAGCGATG CAGAGGCGTT TATCGTGGCG CAGTTCACGC GCTACTCGAC GCGCATGGGC GATTTTGCTG CGCGCGCATT CCGCGAACGC TGGATCGACG CCGAACCGCG CGCAGGAAAA GTCGGCGGCG CGTTCTGTAT GTCGCTCCGC CGCGATGAGT CGCGCATTCT GCTGAACCAC GATCCCACAG CGGACAGCAT GTTTACGCTG GCGCACGAAC TCGGGCATGG CTACCACAAC CTCAACCTGG CGCAGCAGAC GATGCTCAAC CGTGATACGC CGATGACCCT GGCAGAAACG GCGAGCATTT TCTGTGAGAC GATTGTGCGC AATGCGGCGC TCCAGGACGC CAGCCGCGAT GAGACGCTCG AAATCCTCGA GGCGTTCCTC AGCGGCGCGT GTCAGGTGGT GGTTGATATT ACGTCACGCT TCCTGTTTGA AACCGCGCTG TTCGAACAAC GCGCCACGCG CGATCTGTCG GTCGCCGAGT TGTGCGTGCT GATGATCGAC GCGCAGAAAC AAACGTATGG CGATGCGCTC GATGAACAAA CATTGCATCC ATTTATGTGG GCGGTCAAGG GGCACTACTA CAGCAGCGGC TTTTCCTTCT ACAATTACCC TTACATGTTC GGCTTGCTGT TCGGGTTGGG GCTGTATGCC GCCTATCAGC GTGCGCCCGA CGCTTTTCAG GCGCGCTACG ACGATCTGCT GGCTTCGACC GGGCTGGCAA GCCCGCTCGA ACTGGCAGCG CGCATGGAGA TCGATCTGCG CTCACCCGCA TTCTGGCGCG CCAGTCTCGA GGTCATTCGC TACGATATTG ATCGCTTCGA GTCGCTGGCA GTTGCGACAT GA
|
Protein sequence | MTLSVSEPLP HWDMTVVYPA LDSPEFNHDL TATRQAFDTM TSLFDRLGIN RRDRQSTDDA AVAAFETVVP ALNELLEQFS TQRAYVYSFV ATDSRNDQAQ ATFSMLMREG VRLTKLLRRL TAWLGGLDVE TLIQRSTIAR DHAYLVRRAA EEARHLMSPA EEELAAELDL SGGIAWARMY QNLTSQILVP IEREGQTVEL PMSQVRNLAR DPDRAVRRSA HEAELAAWER AALPLASALN SIKGQVLTLS RRRRWESPLE ASLFDNGIDR ATLDAMMTTA REFFPDFRRY LRAKARLLGL ERLAWYDLFA PVGSGGRSWR FSDAEAFIVA QFTRYSTRMG DFAARAFRER WIDAEPRAGK VGGAFCMSLR RDESRILLNH DPTADSMFTL AHELGHGYHN LNLAQQTMLN RDTPMTLAET ASIFCETIVR NAALQDASRD ETLEILEAFL SGACQVVVDI TSRFLFETAL FEQRATRDLS VAELCVLMID AQKQTYGDAL DEQTLHPFMW AVKGHYYSSG FSFYNYPYMF GLLFGLGLYA AYQRAPDAFQ ARYDDLLAST GLASPLELAA RMEIDLRSPA FWRASLEVIR YDIDRFESLA VAT
|
| |