| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1881 |
|---|
| Symbol | |
|---|
| ID | 5208841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2333426 |
|---|
| End bp | 2334856 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640595489 |
|---|
| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
|---|
| Protein accession | YP_001276220 |
|---|
| Protein GI | 148656015 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0415233 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAAG TCGTTCACCT GCATATGCCA GAAGAAGCGC GCGCGACGCA ATCACGCGAC
GCCACGCCGC GCGAACGCCG CTATTATGTC TGGACGGTCG GCTGCCAGAT GAACGTTTCG
GACTCGGAAC GGCTCGAAGC CGCGCTGCAG GGTGTCGGCT ACGCGCCTGC CGAACGTCCT
GAAGACGCGA GTTTCATTGT GCTCAACTCA TGCAGCGTGC GCGCCTCGGC GGAAGAGCGC
ATCCTGGGCA AACTGAGCGA GGTGCAACGC CTCAAACGCA AGCACCCGGA CACAAAAGTG
GTGCTCTGGG GGTGCATGGT CGGTCCTGGC AATCAATCGA TCTTCCAGAG CCGCCTGCCC
ATGGTCGACC ATTTTGTGTC GCCATCGGCT GTCGACGAAG TGCTGGCGCT GGCGCCGAAC
CCGATCTACC AGCTTGAAGA GCCGGCGCTG CCGGTGGCGC GCTGGGATCA TCCGCCGGTA
TCGGTGCATG TGCCGATCCA GTACGGCTGC AACATGTCGT GCTCATTCTG CGTCATCCCG
CTGCGCCGTG GGCGCGAGCG CAGCCGTCCG CTCGACGAGA TCGTCGAGGA GTGCCGCCGG
ATTGTGGCGC GTGGCGCAAA AGAGATCACA TTGCTGGGGC AGATCGTCGA CTCGTGGGGG
CACGATCTTC CGGGGCGCCC CGATCTGGCG GATCTGTTGC GCGCCGTTCA CGACATCCCC
GGTTTGCTGC GACTGCGCTT TCTGACCTCG CACCCGGCGT GGATGACCGA CCGCCTGATT
GCGGCAGTGG CGGAACTGCC GCGCTGCATG CCGGACATCA ACCTGCCGGT GCAGGCAGGC
GATGATGCGC TGCTCAAGAT CATGCGCCGC GGGTACACGG TGCAACGCTA CCGCGACCTG
ATTGCAAAAA TCCGCGATGC CATCCCCGAT GTGTCGCTGA CCACCGATGT GATCGTCGGG
CATCCCGGTG AGACGCGCGA ACGTTTCGAG GGGACGAAGC GCCTGCTGGA AGACATCCGC
TTCGACAAGG TGCACATTGC GGCATTCTCG TCGCGCCCCG GCACACGCGC TGCCGACATG
GAACTCGACC CGACGCTGGC GGTTCCCGAA GGTGAGAAAC AACTGCGGCG CATCGAACTT
GAGCGTCTCC AGGAACAGAT CGCTGCCGAA CGCAATGCGC GCTTCCTGCA TCAGACCGTC
GAGGTGCTGG TCGAAGGCGA ACACAAGGGC AAGTGGCGCG GGCGCACACC CGGCAACAAA
CTGGTGTTCT TCAGCGACCC GGACGACTGG ACAGGACGCC TGGCACGGGT GATCATCACC
CACACCGGTC CCTGGTCGCT CCAGGGTGTG CTGGCGCGGT CAGATGAGAC GTTTGCGCGC
GTCAACGGCG CGCTGCATGC CGTTGCTGCG GCGAATGGAG CGGCAGTCTG A
|
|---|
| Protein sequence | MTEVVHLHMP EEARATQSRD ATPRERRYYV WTVGCQMNVS DSERLEAALQ GVGYAPAERP
EDASFIVLNS CSVRASAEER ILGKLSEVQR LKRKHPDTKV VLWGCMVGPG NQSIFQSRLP
MVDHFVSPSA VDEVLALAPN PIYQLEEPAL PVARWDHPPV SVHVPIQYGC NMSCSFCVIP
LRRGRERSRP LDEIVEECRR IVARGAKEIT LLGQIVDSWG HDLPGRPDLA DLLRAVHDIP
GLLRLRFLTS HPAWMTDRLI AAVAELPRCM PDINLPVQAG DDALLKIMRR GYTVQRYRDL
IAKIRDAIPD VSLTTDVIVG HPGETRERFE GTKRLLEDIR FDKVHIAAFS SRPGTRAADM
ELDPTLAVPE GEKQLRRIEL ERLQEQIAAE RNARFLHQTV EVLVEGEHKG KWRGRTPGNK
LVFFSDPDDW TGRLARVIIT HTGPWSLQGV LARSDETFAR VNGALHAVAA ANGAAV
|
|---|
| |