| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1744 |
|---|
| Symbol | |
|---|
| ID | 5208701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 2156637 |
|---|
| End bp | 2158103 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640595350 |
|---|
| Product | protoporphyrinogen oxidase |
|---|
| Protein accession | YP_001276084 |
|---|
| Protein GI | 148655879 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1232] Protoporphyrinogen oxidase |
|---|
| TIGRFAM ID | [TIGR00562] protoporphyrinogen oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCGA TGTATGCCAC ATCGACGGCG ATGCCGTTCT CGCATGATCA TCCCCACATC
GTGGTGGTTG GCGGCGGGAT CAGCGGAATG AGCGCAGCGT ATGAACTGGG TCGCGCAGTG
CGCGACGGCG CTGCGCCAGT CGCCGTCACG CTGATCGAGC GCGAGGCGCG TTTAGGCGGC
AAAGTGGTGA CCGAACGGAA CGGCCCCTTC ATCATCGAGG GAGGTCCCGA CTCCTTCATG
GCGCAGAAGC CGTGGGCGGC TGAACTGGCG CGTGAAATCG GGTTGGGCGA TGAGTTGATG
GTCGCCTCGC CGATGCGCCG TACCACCTGG GTGTTGCACA ACGGGTGTCC CCACCCCCTG
CCCGAAGGCA TGCTGCTCAT TGTGCCGACG CGCATCGCTC CTTTCGCTTT CTCGCCACTG
ATTTCTCCGC TCGGTAAACT GCGCATGGCG CTCGACCTGT TCGTGCCAGC GCGTCGTGAC
GATGGCGATG AAACCCTCGC CGACTTCATC CGCCGACGCC TGGGGAATGA GGCGCTCGAC
CGTCTGGCGG AACCGATCCT CTCCGGCATC CACAGTGCAG AATGTGAGCG CCAGAGCATT
ATGGCGACCT TCCCGCGCTT CCGCGAGTTA GAGAAACGGC ACGGCAGCCT GATCCGCGGC
ATGCTTGCCG CGCGTCGCTC AATGCCGCCG TCTTCAGCGC ATCAGTCGCC CTTCATGACC
CTTCGCGGCG GCATGGGTTC GCTGGTCGAG CGGCTGGAAC AGCGCCTGAC GGCGCGTGTC
CTGACCAACC GCAAGGTCAT GGCGCTGGCA TATGATCCGA CTGCTGCGCG TCCATATCGT
CTGCGGCTGG ACGATGGCGC CACGCTGGAT GCCGACGCCG TCATCCTGGC GACCCCATCC
TACACTGCTG CCGATCTGGT GGACGAAGCG TTCCCGGATC TGGCGAGCGC TCTGCGCGCC
ATCCGGTACG TTTCGACGGC GACGATCTCG ATGGTCTACC GACGTAGTGA AGTTGGCACG
CCGCTCGATG GGTATGGGTT GGTGATCCCG CGCAGCGAAC AGACCTGGAT CAACGCCTGC
ACCCTCTCAT CGGTGAAGTT CCGCCACCGC GCCCCCGACG ATTATCTGCT GCTGCGCTGC
TTCGCTGGCG GATCGCGCCG CCCGGAACTG CTCGCGCGGG ACGATGACGA CCTGGTGCGC
CTGGCGCAGT CCGATCTGCG CGCTATCCTG GGTATCACCG CCGCCCCTGT GCTGACGCGC
GTCTATCGCT GGCACAATGG CAACCCGCAG TACGATGTCG GGCATCTCGA TCGCATCGCC
GCGCTCGAAG CGCGTTGTCC AGATGGATTG TTGCTTGCTG GCGCAGCGTA CCGCGGCGTC
GGCGTGCCCG ACTGTATCAA ACAGGGGCGG GACGCTGCGC GTCGGGCGCT GGCGCTGGTG
ACGTCTGTCC AACCGGCGAA AAGTTAA
|
|---|
| Protein sequence | MTAMYATSTA MPFSHDHPHI VVVGGGISGM SAAYELGRAV RDGAAPVAVT LIEREARLGG
KVVTERNGPF IIEGGPDSFM AQKPWAAELA REIGLGDELM VASPMRRTTW VLHNGCPHPL
PEGMLLIVPT RIAPFAFSPL ISPLGKLRMA LDLFVPARRD DGDETLADFI RRRLGNEALD
RLAEPILSGI HSAECERQSI MATFPRFREL EKRHGSLIRG MLAARRSMPP SSAHQSPFMT
LRGGMGSLVE RLEQRLTARV LTNRKVMALA YDPTAARPYR LRLDDGATLD ADAVILATPS
YTAADLVDEA FPDLASALRA IRYVSTATIS MVYRRSEVGT PLDGYGLVIP RSEQTWINAC
TLSSVKFRHR APDDYLLLRC FAGGSRRPEL LARDDDDLVR LAQSDLRAIL GITAAPVLTR
VYRWHNGNPQ YDVGHLDRIA ALEARCPDGL LLAGAAYRGV GVPDCIKQGR DAARRALALV
TSVQPAKS
|
|---|
| |