Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_1654 |
Symbol | |
ID | 5208611 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 2030058 |
End bp | 2032982 |
Gene Length | 2925 bp |
Protein Length | 974 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640595262 |
Product | peptidoglycan binding domain-containing protein |
Protein accession | YP_001275996 |
Protein GI | 148655791 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3409] Putative peptidoglycan-binding domain-containing protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00486103 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0226395 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGTTC GACGTGCTTC CCCGATCAGG CGCCTTGAGA AAACCGGTCA TCACGAGATT GTGCGGCGGA CGTCGCCAAC CGATGATGCT CCGACCGGTC ATCGGTTCAG CCATGATTTT CGTCAGGTGC GTCTCAGCAG CGCAGAACCG CCTGTGACGT TCGAAGCGGA GACGGAGGAA GCGCAGCAAG GGGAATCGTT GCAGTCGGAA GAGGTTGAAG CGACCCGAAC TCATCCGACG CAAAGAGTGT TGTCGGGTTC CTGGTTGGTG CAACGTCAGG AGGGTGCGTC AGGTTCGGCT TCGATATTCG ATGAGATTAC CGCTGAAGCA GCAGCGTTGC GACCAGGATT GCCCACTACG TTTGCAGACT ATCGTCAACG CATTCAGAGC GCAACATTTC TAGGTGTGAG CATCTCTGGC GGCGTTGATC AGGAAATGGC GGGTGTGTTA CAGCGTGCTG AGCGGGAACT GAACTTTACA CCGGGTTCGC GCAATCAGCA CGGGGTCTAT CAGATTGGCG GGATGGATGC CAGTCGGCTC CACGGTTTGC ATTCATGGGG ACTGGCAATC GATATCAATA CACCAACCAA CCCCTACATT ATGCACGAAG CCGGTGAGGC GCAACTCGAT CAACAGCTGG CGCCGGTTTA TGATCGCATT GCCTGGTTTA TTCTGGGGAG AAGCTCGGTT ATTCCCCGGC AGATCCAGCA GTCATCCGGT GGTTCACGCG AACAACGGAT TGGCGACATG TATGATCGTC TGGCAGAAGA AAGTCAGGCG ATGCAAACCT ATTTCCGCTA TATGCAGAAT GTCGCGGAAC TGGAACAGTA TCTGAGCACC CCTGAGGGAT ACGAACGCTA TCTGCTGATC ACGCACACAA CCGAGCCGGA CCGCTCGATG CCGCCTGATA TTGAGGCATT GCGCCGACAG ATGATGGCAG ATTTTGCAGT GTTGACATCG CGTCCTGGAC CGGTCATTCA ACCCATTGAG AATGAGCAGG CTGGCGCATC GGTTGCTCCA CCGCTCACAT ATCCACATCC TGAACGCCTG GAGGGACGAC AGGATCGCCC ATTTGATCGT GGCGGATCGA GGCGCACACC GCTGCGAGGG TTTCTTGACC TGGAACGTGA GGTGGTGATG GCGCTGACGC GCGCCGGATT GCGCTGGGGC GCCTGTGAGT TGGGTGCAGA GAGTGGCGAC ATCATGCACT TTGATATGGC GCTCCAACCG CTCGGTCAGG CGGTTTTTCA GGCAATCCGC ACTGTCAAAG CGCGTCATCG CTCTTCGGCT CGTCCTGCGC AACGTATGAC TGCATCGAGT GGCGATGCCG TTCCTGATGT TTCACCCGCT ATCGAGTCGG ACATTGACGC CATGCGTGGC GGCGGCGCTC CGCTCGATCC GACGACGCGC GCCTTCATGG AGCCGCGCTT CGGGCACGAT TTCAGCCGGG TGCGGGTGCA TACCGATGCG CGCGCCGCAA CCGTCGCGCG GTCGCTCGAC GCGCTGGCGT TCACCGTCGG CGACGACATC GCCGTTGCGC CGGGGCAGTA CCGACCGGGA AGCGACGAAG GGCGGGCGTT GCTGGCGCAC GAGTTGACCC ACACCATCCA GCAGACCGGC GGCGCGACGC GGGTGCAGCG GCAGGAGAAC GTGAACACCG GCAGCCCATC GACAGGCAAC GGTTCGTCAC CGGGTAGCGG GCGACGCATG ATCAGTTATG GCAGCCAGGG GCAGGATGTC GCCGATGCAC AGCAGTTGCT CAACCAGCAT GGCGCTGCGC CGCCGCTTGT GGTAGACGGC ATCTTCGGAC CGAAAACACG CCAGGCGACG ATTGAGTTCC AGAAGTCGCG CGGTCTCGCG CCCGACGGCA TTATCGGACC ATTGACATGG GGGGCGCTGG AATCGGGAGC GCCGCAACCG CAACCGCCAG GACCGCAACC GCAACCGCCG GGACCGCAAC CGCAACCGCC GGGACCGCAA CCGCAGCCGG TCGAACGCTG GACGAACGAA GACCGGACGA TGATCGCCGC GCATATCCAG CCTGGTGTGT TGACGGCATA CCAGGCGTCG CGGATCGAAC CGGCGGTGAT GGCGCTCGCT GATGCGGAAT ATACCAGTTT TCGCGCCCTG CTCCAGAATG CCGGTTCCGC TATGGAACGC GCCTTTCTGT GCAAGGCGCT GGCGGCAGGG CGTTCACTGA GTGATATAAC CGATTTCGCC GCCACAATCC ACGGCATGAG CGACAACTGG TTGCTGCGCA ATCTGAATGT CGTAGACCTG AACGAAGCGG ATGGCGTCGA GCGCGGCATT ATTCAGCAGT ACGGCAACAG TTGCGGTCCC ACGTCGGTGC AGGTCATCCG CGCTTCCGCC GACCCGATCT ATGCGCTGGC GCTGCGTTCC GCCGGTCCGA TCGAGCAGGC TTCGGAACAT GCGGTCAGTG CGCCCGACAC CATTCCAAAC CAGATGCTCG CCGGCGAACA GAAAGCCATT CTCGACACCC ATGCTGCGAC AGGAACCGGC AATCCGGCGA CCGACCGCAC CCAACCCACC GGCGGCGCCT GGGTGGAAGG GGAAATGAAT GCGCTTGCCA GCGCCACCGG GGTTACATAC CAGACACGGA TCGTCGGAAC GCAGATCACG CTCGATGCGG CACTCGATGT GCTGCGGACC AATCTGACCG CCGGCATTTT CGTGCCGATT GTCGTTGGCG GCAGTGTTGG CGACACGGCG CACTATGTGA TGGCGATGGC AATCAGCGGC AACCGTATCC AGATCCACGA TGTCGCCACC GGCGACACCA TCTGGCGCAC TGAACAGGAG TTCAAGGACA GCGCGCTCAA TCTGCCGAGT GGACACAAGA TGCTGACTGC CATCGACGTG CCGACCGCTG TGCCGACGAC GCAACCGCAA CCTGCAACGC CGTGA
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Protein sequence | MTVRRASPIR RLEKTGHHEI VRRTSPTDDA PTGHRFSHDF RQVRLSSAEP PVTFEAETEE AQQGESLQSE EVEATRTHPT QRVLSGSWLV QRQEGASGSA SIFDEITAEA AALRPGLPTT FADYRQRIQS ATFLGVSISG GVDQEMAGVL QRAERELNFT PGSRNQHGVY QIGGMDASRL HGLHSWGLAI DINTPTNPYI MHEAGEAQLD QQLAPVYDRI AWFILGRSSV IPRQIQQSSG GSREQRIGDM YDRLAEESQA MQTYFRYMQN VAELEQYLST PEGYERYLLI THTTEPDRSM PPDIEALRRQ MMADFAVLTS RPGPVIQPIE NEQAGASVAP PLTYPHPERL EGRQDRPFDR GGSRRTPLRG FLDLEREVVM ALTRAGLRWG ACELGAESGD IMHFDMALQP LGQAVFQAIR TVKARHRSSA RPAQRMTASS GDAVPDVSPA IESDIDAMRG GGAPLDPTTR AFMEPRFGHD FSRVRVHTDA RAATVARSLD ALAFTVGDDI AVAPGQYRPG SDEGRALLAH ELTHTIQQTG GATRVQRQEN VNTGSPSTGN GSSPGSGRRM ISYGSQGQDV ADAQQLLNQH GAAPPLVVDG IFGPKTRQAT IEFQKSRGLA PDGIIGPLTW GALESGAPQP QPPGPQPQPP GPQPQPPGPQ PQPVERWTNE DRTMIAAHIQ PGVLTAYQAS RIEPAVMALA DAEYTSFRAL LQNAGSAMER AFLCKALAAG RSLSDITDFA ATIHGMSDNW LLRNLNVVDL NEADGVERGI IQQYGNSCGP TSVQVIRASA DPIYALALRS AGPIEQASEH AVSAPDTIPN QMLAGEQKAI LDTHAATGTG NPATDRTQPT GGAWVEGEMN ALASATGVTY QTRIVGTQIT LDAALDVLRT NLTAGIFVPI VVGGSVGDTA HYVMAMAISG NRIQIHDVAT GDTIWRTEQE FKDSALNLPS GHKMLTAIDV PTAVPTTQPQ PATP
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