| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1619 |
|---|
| Symbol | |
|---|
| ID | 5208574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1985362 |
|---|
| End bp | 1988061 |
|---|
| Gene Length | 2700 bp |
|---|
| Protein Length | 899 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640595225 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001275961 |
|---|
| Protein GI | 148655756 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5002] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGGGC TTGTATCGGT CTTCCGCTCA CACATCCGAT ACAAAATCAT CCTCCCCTAC
CTGGCGCTGA CCCTGGTGGT GATGATGGCG GGGGCGGCGA TTGCCGTTGG TCTGGTGGCG
GCCTCGTGGG AAGAGCGGTT GCAGAACCAG CTTGCGCAGG TGGCGCGTAA CACCACCGAT
GCCCTGGTGC GCCGCGAGCG CAACAATCTG GAGTTCTTGC GGCAGGTGGT GTTCGCGCCG
GCCAACCAGG ATATTCCGGC AGTCGCCGAT GCGTTTGCCA GCGGTGACGA TGAGCAGGTT
ATGCGCGCAC TCGAACCGTA CTATCGTTTT GGCGTTGGGA GCGTTAACCT CGATTTTGAC
CGCATGATCG CCTTTGATCG CAACGGCAAG ACTCTCGTCG ACTGGTTGCG CGTTTCAGAA
GACCCTGACG CCCTGCCTGC CCGGATCACG ACGACCGATC TGTCGGGGCT GGATTTTGTG
CGCGCGATTG TCTCAGGAAC AACGATTGAC GGAAACGATA AATTTGCGAA CCTGATCTAC
TTTGCGCCTG ATGTGCAACC CTATTTCTAC ACCGTTGCGC CGGTGCGCCG GGGAAATGAC
GTCGTCGGCG GGGTTCTGAT TGCGGTCAAG TGTGATCGTT TGCTCGCTTC ACTCGAACGA
AGCAGTCAGG CAGCAGTGAC CACCTTCTAC GACCTGTCGG GGCGGGCGAT CAGCACCACC
CTGTTGCCGC GCGCAGAGTT GAGCACCCTC GATATGCCGC CGCAGGTGCT GCAGGCATTG
CTCAACGGGC AGGCGCAGTC GATCTTCACT GTCGAACTGC GCCAGCGCGG GTATCAACTG
GCGTACAGTC CGCTGGTGAT AGCGAATGTT CAGGTCGGTT ACTTCTCGGT CGGTCTCTCG
CGCGATTTTC AGGTGCAGCA GTTGTCGCTC AGTCGCAATA TCGTGACGGC GATTGCCATC
GTGCTGGCAA CCGGGTCGGT AATTCTGGGG TATCAGATTG CGCGGCGGAT CACCCGCCCG
CTGGCGGATC TGGTGGCGAC TGCCGAAGCA GTGACGGGCG GCGATCTCGA AGCGCGCACC
ACAGTCATGT CGCCGGATGA ATTCGGTCGT CTGGCGCTGG CGTTCAATCA GATGACCGAG
CATCTGGCGC GATTGTACCG CACGAGTCGC GACCTCAATC AGGCTATCGA GGTGACGCCG
GTATTGAAGG TGGCGGAACG CGCCGTGCGT TCCCTGTTGC CCGATGCGGA CGTGCTGGCG
TTGATCGCCG AGGAAGGCGC GTTGCGCTAC CATGTCGATG AAGGGCTGCC CGCCATCGTG
CGCAGTCTGC GCCACGTTCG GGTGCCGGTG AGCGATCCGC TGGTGCGCGA GATCAGTGAA
ACGCAACAGG CGGTGCTGCT GTCGTCGCAG GATGAGCCGC GCCTGACGGC GTTCGGTCTC
ACGCAGGTCG CCGGATATCA GAGTCTGCTG CTCTCCCCGC TGGTCGTTCA GGATGAACCG
GCTGGCGTGC TGATCATCGC GCACCGTGAA CCCGCCGCAT TTACCGGCAG TGTGCTGCCA
TCGGTGGTTG CGATTGCCAA CATGACGACC AGTGTGCTGT ACAACGCCGT GCTGTTTGAC
CGGGTTCAGC GCGAAGCGCT ACGGCGACGC GCCATTCTCG AGTCGATTGC CGATGGCGTT
GTGGTGCTGG ATCGCCAGCG TCGGATCCTG ATCGTCAACC GTGCTGCCGA GCAGATGCTG
GGCATGAGCG ACTGGCGCCT GGTGCAGCGT TCGTTCAGCG ATATACCGCT GACGCGCGTT
GAAGTCCGCC ACGAGATGTT CAGCGAGAAT GGCGCTACCC AGCGCGACCT GTACCGCCTG
GGTGATCGCG TCCTGCGGTT GAGCCACGCA CCCGTAACGA CCGACGAGGG GACGCAGATC
GGCGAAGTGG TGGTGCTGCA CGATATTTCG GCGGAGGTCG CCGTCGATCA GGCGAAAACC
GATTTTATCG CCACGATTTC CCACGAATTG CGTTCGCCGC TGACGGTGAT CTACGGCTAC
ACCGATCTGC TGCTGCGCGG CATGGTCGGC GAGTTGAGCG GCGAGCAGCG CGATCTGCTC
GAAGCGGTGC GCAACCGCGT TGAGTTGATG AACAATATCG TCAGGAATGT CATCATGGTC
GCCAGTATCG AAGCCAACAC GTTGCAGACC GACTTCGCAG CGCAGGATGT GCGCCGGATG
ATCGATGAAG CGGTCGCGCC GATGCGGAAG TCGTTCGAGA AGAAGGGGCT GGCGTTGACC
GTGACAACGC CCGACGATCT GCCGCCGGTG CGCGCCGACC GTGAGCAGCT GTTGATTATC
CTGGGACAGG TGATTGATAA CGCGCGGCGC TATACTCAGC AGGGCGAAGT GACAATCACG
GCGCATCAAC GCGACAATGG CATGGTGCAG ATCGATGTTT CCGATACAGG ACCGGGCATT
CCTGCCGATG CGATGAACCG ATTGTTCACG CGCTTCTTCC GTGTCGAAGG GAACAATTCT
CCCGAACGCG GCAGCGGTCT GGGACTGGTC ATCACCCGGC AACTGGTCGA ACGTCACGGC
GGAAAGGTGT GGGCGCACAG CGAAGTTGGG CGCGGCAGCA CATTCAGCAT AGCACTCCCT
ATCGCCCATG AGTACACAAA CACCATCACC AGCCCGGGCG GAACGGGCGC GACAGCCTGA
|
|---|
| Protein sequence | MRGLVSVFRS HIRYKIILPY LALTLVVMMA GAAIAVGLVA ASWEERLQNQ LAQVARNTTD
ALVRRERNNL EFLRQVVFAP ANQDIPAVAD AFASGDDEQV MRALEPYYRF GVGSVNLDFD
RMIAFDRNGK TLVDWLRVSE DPDALPARIT TTDLSGLDFV RAIVSGTTID GNDKFANLIY
FAPDVQPYFY TVAPVRRGND VVGGVLIAVK CDRLLASLER SSQAAVTTFY DLSGRAISTT
LLPRAELSTL DMPPQVLQAL LNGQAQSIFT VELRQRGYQL AYSPLVIANV QVGYFSVGLS
RDFQVQQLSL SRNIVTAIAI VLATGSVILG YQIARRITRP LADLVATAEA VTGGDLEART
TVMSPDEFGR LALAFNQMTE HLARLYRTSR DLNQAIEVTP VLKVAERAVR SLLPDADVLA
LIAEEGALRY HVDEGLPAIV RSLRHVRVPV SDPLVREISE TQQAVLLSSQ DEPRLTAFGL
TQVAGYQSLL LSPLVVQDEP AGVLIIAHRE PAAFTGSVLP SVVAIANMTT SVLYNAVLFD
RVQREALRRR AILESIADGV VVLDRQRRIL IVNRAAEQML GMSDWRLVQR SFSDIPLTRV
EVRHEMFSEN GATQRDLYRL GDRVLRLSHA PVTTDEGTQI GEVVVLHDIS AEVAVDQAKT
DFIATISHEL RSPLTVIYGY TDLLLRGMVG ELSGEQRDLL EAVRNRVELM NNIVRNVIMV
ASIEANTLQT DFAAQDVRRM IDEAVAPMRK SFEKKGLALT VTTPDDLPPV RADREQLLII
LGQVIDNARR YTQQGEVTIT AHQRDNGMVQ IDVSDTGPGI PADAMNRLFT RFFRVEGNNS
PERGSGLGLV ITRQLVERHG GKVWAHSEVG RGSTFSIALP IAHEYTNTIT SPGGTGATA
|
|---|
| |