Gene RoseRS_1471 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_1471 
Symbol 
ID5208426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp1791594 
End bp1792166 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content58% 
IMG OID640595081 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001275817 
Protein GI148655612 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000133791 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.688879 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGGAGC AGTCCGACGA ATACGCGCTG ATCAAACGCT CCATCGATGG TGATCACGAC 
GCTTTTGCGC AACTGATGGG GCGCTATGCC GGATCAGTGT TCAATCTGGC GTATCGAATG
CTCGGAAACG CTCAAGAGGC AGAAGATGCC AGTCAGGAGA TCTTTCTGCG GGCGTACACC
AATCTGGCGC GTTTCGACCA GGAACGCAGG TTTTCGACCT GGCTTCTGTC GATCGGGTCA
AACTATTGTA TCGACCGTCT GCGGCGGCGG CGATTTGCCT GGTTGACGCT CGACGATGTG
GTGCTGAGCG TCCCGACGTC GGCGAAAGGC CCGGAACGCA GCGCTGTTGA GCGGGAAGAA
CGCGACGCTG TACAGCGTGC ACTCCTGAGC CTGCCGCCGA CGTACCGTGA AGTTGCTGTG
CTGCGTTACT GGAACGATCT CTCGTATGAA GAGATTACGC AAGTGACCGG TTTACCGGAG
AGCACGATCA AAACCCGATT GCACCGCGCA CGGCGTATGC TCGCCGAGGC ATTGCGTGCT
GAGGGTGTTG TCCATGAAGA AATACCCTCC TGA
 
Protein sequence
MVEQSDEYAL IKRSIDGDHD AFAQLMGRYA GSVFNLAYRM LGNAQEAEDA SQEIFLRAYT 
NLARFDQERR FSTWLLSIGS NYCIDRLRRR RFAWLTLDDV VLSVPTSAKG PERSAVEREE
RDAVQRALLS LPPTYREVAV LRYWNDLSYE EITQVTGLPE STIKTRLHRA RRMLAEALRA
EGVVHEEIPS