| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1089 |
|---|
| Symbol | |
|---|
| ID | 5208036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 1353510 |
|---|
| End bp | 1354598 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640594703 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001275447 |
|---|
| Protein GI | 148655242 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.126635 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGACA CCATCATTTT CACCCGTGGC GTTCCGCCAG CCGAAGCATT TCCAACCGCG
CAGATCGCCG AATGTCTGGC GACGGCAGTC GAGACGGATG CGGCAGTCGT TCTCCAGTAC
GGTCACCAGC CCGGCTATGC ACCGCTACGG GCGCTGCTCG CCGCCGACTA CGGCGTGAAG
GACAACGAAA TCATGGTCGC CAATGGATCA TTGCAGTTGC AGGATCTGCT GGCGGCGCAT
CTGGTGCGTC CAGGGACGAC GGTGCTGACC GAACAGCCCA GTTACGACCG CGCCATTACG
ACGTTTCGCC GTCGTGGTGC GCGGGTGGTC GGTATTCCCC TCGAAGCCGA TGGGCTTGAC
GTGGCGCGTC TCGAAGCCGA GGTCAAACGG CAGACCCCGG CATTCCTCTA CACGGTTCCC
GATTTCCAGA ACCCGGCCGG GGTGACGACA TCGCTGGAAA AGCGGCGCGC AATTCTGGAC
ATCGCCGAAC GGTATGGCTT CTGGGTGATC GAGGACATTC CGTATCGATT GCTGCGCTAC
CGTGGCGAGA GCGTGCCGAT GATGCGCGCG ATCAATCCCG GACGGGTGAT CACCATCACA
TCGTTCAGCA AACTTCTCAG TCCTGGCATG CGCGTCGGCT ATCTGGTGGC GCCGTCGTCG
CTGGTGGCGG CGGTGACGAA GGAAGCGGAG AACACGTATC TTTCGCCGGT GCTCCCGACG
CAGGCAGCAG TTGCAGAGTT TATCCGGCGC GGCTGGATGG CGCCGAACAT CGAGCGGCTG
AAAGAACTCT ACCGCCCCCG CTGGGAAGCG ATGATGAACG CGGTGCGGCG CTACCTGAGC
GGCGTCGCCG CTTCCGAACC GGATGGCGGC TTCTTCATCA GCGTCACCCT GCCGGCTGAT
GCCAATACCC GCAACCTGGT TGCACGCGCG AAGGAGATCG GTCTGGTATT GACCGAAGGG
CAGGCGTTCT TTGCCGACCC TGACGAAGGT CCGGCGCCGG ATGGCGAACG CTTTGTTCGG
CTGCCGTTCT GCGCGGTGAC GCCGGAGCAG ATCGACGAGG GCGTGCGCCG ACTGGCGTCG
CTGCTGTAA
|
|---|
| Protein sequence | MHDTIIFTRG VPPAEAFPTA QIAECLATAV ETDAAVVLQY GHQPGYAPLR ALLAADYGVK
DNEIMVANGS LQLQDLLAAH LVRPGTTVLT EQPSYDRAIT TFRRRGARVV GIPLEADGLD
VARLEAEVKR QTPAFLYTVP DFQNPAGVTT SLEKRRAILD IAERYGFWVI EDIPYRLLRY
RGESVPMMRA INPGRVITIT SFSKLLSPGM RVGYLVAPSS LVAAVTKEAE NTYLSPVLPT
QAAVAEFIRR GWMAPNIERL KELYRPRWEA MMNAVRRYLS GVAASEPDGG FFISVTLPAD
ANTRNLVARA KEIGLVLTEG QAFFADPDEG PAPDGERFVR LPFCAVTPEQ IDEGVRRLAS
LL
|
|---|
| |