Gene RoseRS_0790 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_0790 
Symbol 
ID5207733 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp979924 
End bp981042 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content61% 
IMG OID640594406 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_001275154 
Protein GI148654949 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.279429 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATTTC TCGACATCGT TCACGTGCAG AAGAGTTTTG GAACAACCAT TGCCGTTGAA 
GACTTCACCC TGGCAGTCGA GCAGGGTGAG TTCGTTTCGT TCCTGGGACC GTCGGGGTGC
GGCAAAACGA CGACGCTGCG CATGGTTGCG GGGTTTGAAA AGCCGACATC GGGGCGGATC
GTCATCGACG GCGTCGATGT GACCGATATG CCGCCCAACC GGCGCAACAT TGGCATGGTG
TTCCAGTCGT ATGCGCTCTT CCCGAATATG ACTGTCGCCG ACAATATCGG TTTCGGGCTG
CGGATCGCGC GTCGTCCGGC GCACGAAATC CACGCGCGGG TCGAGGAACT GCTGCGCATC
ATTCATATGC CCGAGTTTGG GCGGCGCTAT CCGTATCAGT TATCCGGCGG GCAGCAGCAG
CGGGTCGCGC TGGCGCGGGC GCTGGCGATC CAGCCAAAAC TGCTGTTGCT CGATGAGCCG
CTCTCGGCGC TCGATGCCAA AATACGCGCC TCGCTCCGCC AGGAGATCCG TGACATTCAA
CGCCAACTCG GCATCACCAC GATTTATGTC ACCCACGATC AGGAAGAGGC GATGGCTCTG
TCCGACCGGA TTGTGGTGAT GAGTCGCGGG AAGATCGAGC AGATCGGCAC GCCCTTCGAG
GTGTACAACT TTCCTGCAAC CCGCTTCGTC GCGTCGTTCG TCGGCACGCT CAACCAGATC
GAGGCGACCG TCGTCGATGC CGCTATCGGA CTGCTGGCGG TTGAAGGTCA GCAATTCCGC
ATTGCCCGCC CCCTCCCGTA TCGCTCAGGC GACACGGTGA ACATCGCCAT CCGCCCGGAG
TTGATCGCGC TCGATGGGCA GTTCAACAGT GCGATGAACC GGTTGAGCGG AACGGTCGAA
GATGTCACCT TTCTCGGCTC GATTGTGCGG GTGCGCCTGC GTCTGGCAGC CAACCGGCTG
TCGATGGACA TCTTCAACAA CCCGCATCTG CGCCCGCCGC AACCGGGAGA GACAATCACT
GTGCATTTTG CGCCCGAAGC CTGCCTGGCG CCGGGCGACG ACACGCCGCG CGGAGCGAAT
GCTCAACCAT TGTCGGCGAG CGCTGCGGAA GCCGCGTGA
 
Protein sequence
MAFLDIVHVQ KSFGTTIAVE DFTLAVEQGE FVSFLGPSGC GKTTTLRMVA GFEKPTSGRI 
VIDGVDVTDM PPNRRNIGMV FQSYALFPNM TVADNIGFGL RIARRPAHEI HARVEELLRI
IHMPEFGRRY PYQLSGGQQQ RVALARALAI QPKLLLLDEP LSALDAKIRA SLRQEIRDIQ
RQLGITTIYV THDQEEAMAL SDRIVVMSRG KIEQIGTPFE VYNFPATRFV ASFVGTLNQI
EATVVDAAIG LLAVEGQQFR IARPLPYRSG DTVNIAIRPE LIALDGQFNS AMNRLSGTVE
DVTFLGSIVR VRLRLAANRL SMDIFNNPHL RPPQPGETIT VHFAPEACLA PGDDTPRGAN
AQPLSASAAE AA