| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0687 |
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| Symbol | |
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| ID | 5207625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 853491 |
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| End bp | 860279 |
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| Gene Length | 6789 bp |
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| Protein Length | 2262 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640594301 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001275054 |
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| Protein GI | 148654849 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00419541 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCAGCAC AACTGGCTGG TTGGGCGCAT CGGTATCTTG AGGCGCTTTG CGCGCAGCCC
CATTTCAGTG CAGCGCGGAC GGTCGCACCA CTCTGGCTGG CGACCGACTC CGGTCTTCCT
GCGGAACCCG GAGCGCCCAT CGCTGCGCCG TTGACCATTC AGATGGCGGC GGAGATTTTT
CCCCGTCTGG CGCTGATCGG TCCGGCGGGC GCCGGCAAAA CGACGACGCT GCGCGCCCTG
GCGATCGGGC TGGCAGAAGC ATTCCTTTCC GGGAATAGTC GCGCGGCATG GGGGAACGCG
AACGCGCCGC TGCCGTTGTA CATCGAACTG GCGCGGTTTC AGGGGAGTGT CGAGGCAACC
CTGGCAACTG AGTTTGGCGT CGGCGATCCA CCGCCGCTCG AAGAACTTGC GCGCGAGCGC
CCGCTCCTTT TTCTGCTCGA CGGACTGGAC GAACTGCCGC CTGCGACCCA ACTCGCCAGC
CTGGCTGCGC TGTCCCACGC TCTGGTCGCA ACCGGCGCCC AGACCCGCTG GATCAGCACG
TGTCGCAGCG AGTTTCTGGG GTTGTTCCGT CCGTGGTTGA ACGGCGCCGA AGTGCGCACG
CTGCAACCGC TCCGTCCACG CGATGTCATC GCGCAGGTGC AACGTCAGGC AGGCGACGTG
GCTGCCGCCT GGATCCAGCG CAACGACGAT ATCGTGCACC TGGCGACCCG TCCACGCTGG
CTCACGGCGC TGATCGAAGC GCGCGACGTC CTGAATGCGC CGATCCAGAG TCGCGGGCAG
CTGCTGGCAA CCTGGATTCC GGCAGTGGCA GCGGCTGCAC TGCTGGCGCA TCCCCGGATG
ATCTCGTCGA CCCAGGCAGT GCATGCGCTG ATCGAGATCG CGCGCATGCT CGATCAACAG
ACCCAGGAGA CTCTCGCCAT CGACGCTGCC ATCGCCGCCA TCGAAGTCAG CGCTTACGTC
CCTGATGCTC ACCTCACGAC TCGTATGGCG CATCAATCGG CGCCTGTGAA CGGGCGAACG
TTGCGTGCAA CGACAGGTGA AGCGGCTCTT CAGACGTTAA TCGATGCCGG TATTCTCGTC
TTCGACGCCG AGCGACGCAC GGTCAGCTTC CGGCATCCCA TTCTGCGCTC CTTCGCGCAG
GCAATGTTGC TGGCGCGCAC CAACCCGGAT CAGTGGTCTC CCGCAACTCT GAGTCGCGCC
TGGATGGATG CGGTCATCTT CGCCTACAGC CTGTCCGATG ATCGTGAAGC TGTGTTGCGG
CGCCTGCTGG CGGTCGGCGC GGTCGGATTG ACGGCGCGCT GCCTGATCGA TGCAGAAGCG
CCCGTCCATT ACGATGAACT GCTCGAACGC AGCGGCACAC TGACGCCGCC GCTGCGTGTG
ATGATTGCCG ACGCATTCGC CGCCGAAGGG CTGGAACGCG CCGCGCTCGA GCAGCTGGAG
CGCGCTGGCG CCGAAGGGTA CGACGAAGCA GGGCTGTTCG GTCGCCTGGG TGATCTCTAC
AGTCGCTCCG GTCAGTGGCG CTTGGCGCGC ATCGCCTACG AACAGGCGCT GGCGCGGGAA
GCCGATGACC TGCGCTACCG CCAGCAACTC GGCGTCGTGT GCAGCCGAAT GGGAGAACTG
GATCAGGCGG CAGCGGCGCT GGAAGCGGTG CTCGACACGC AGCAAAAGCG TCTGGCAGCG
GCAGCCCACG AACTGGGACA TGTGTATCTG CAACAGGGGC GCTTCGTCCA CGCGCTGGAA
GCGTACCGAC ACGCGGCGCA ACAGCAACCC GGCGACCCGG CATACCGGCG CAGCGTGGCA
ACAGCGCTGC GTCGTCTGAA ACGCATCGAT GAGGCGGAAG CGCAGTTACG CAGCCTGATC
GCCGAGTCTG GCGGCGACGC GGCGACATAT GCGGAACTCG GCGAGGTGTA CGCTGATGCC
GGGCGTTGCG TTGAAGCGAT CGAGAGTTAT GCGCGCGCCG TCGCCCTGCG CTCCGACGAT
CCATCGCTGT ATGCGCGGTT GGGACAGTTA CGCCACAGCG CTGGCGATCT GCCCGGTGCG
CGCGCCGCGC TGCAACGCGC CGTCGAACTC GATCCCTCGG ATGCCGGGCT GCACGATGAG
TTGGGACAGA TCTTCGAGGC GTGCGGCGAA ACCGGCAATG CGCTGGCAGC CTACCGCGCT
GCGGTCTCGC TCGACCCGCA GTGCGACGCT TACCACCGTC GTCTCGGCGC ACTGTTGCGC
GATTGTGGCG ATGACGACGG CGCAGCGGCA GCATTGCGCA CCGCGCTCGA ACTGCGCCCC
GATAGCGCCG AGACCTATGG TGAACTGGCG GAACTGCTCT GGCGATCCGG CGAGAGCGAG
AAGGCGCTCG ACGCCTGCCG ACGCGCGTAT GCGCTGGCGC CCACGTCCCC CGATCACGCG
CGCGCGCTGG GACTGGCATA CCACCGGGTC GGACGGGCGC GCGACGCCGA ACGCACCCTG
CGCGATGCGC TTGCGCTTGC GCCTGATCGC GCCGATCTGC ACTTCGACTA TGGCATGGTG
GCTGAAAGCA TCGAACAGTG GGACGCTGCA CTCGCCGCCT ATGAACGGGC GGCGATGCTC
GCTCCGCAGC GCGCCGACTA TGCCCGTGCT GCTGGCGCAC TGCTCCTGCG CCGCGGCGAA
CTCAAACGCG CGCGGACACT GCTGGCTGGA GCGCTGCGCC GCGCGCGTCG TGACCCCGAA
ACCCTGTTTC AGACCGGTTT GTTGCACGTC GCCGCTGGCG CGTGGCATCT GGCGGCGCGA
TCCTTTCAGC GCGCCGTGCG GTTGAGCGGC GGAGCGCGGT ACGAAAGCGC ACTGGGCAGG
GCATACCTGC GCCTCGGCAG GGCGGAAGAC GCATGCGCCG CACTCGAACG CGCGCTCCAT
ACGAATCCTG ATGATGTCGA GACGCTCGAC ACCTACCGGG AAGCGCTGGA GGCGTGCGGT
CGTCTCGAAG CGGCGTACAC CGTCGGGCGG CGCGTCGCTC GTCTGGCGCC GGGGAATGCC
GTGATCCAGC AGCGTGCCGG GAGTATCGCG CTGCGACTGG GGCGTGTGAA CGAGGCGCTG
GAACTGCTCG ACCACGCCGT GGCGCTCGAC TCACGGCTCG TGCCAGCGCA TAGTGAGCGA
AGCCGGGCGC TCCTGGCTTC CGGGCGCGCC GGGGCTGCGC TGGCTGCCGC GAATCAGGCG
CATGCCCTCG CCCCCGATCT GCCAGAACCG CTGGCGCTGG CAGCCGAAGC TCTGATAGCA
CTGCAACGTG ATGACGAAGC GCGCCCGTTG CTGGAACAGG CGCTGGCGCT CGATGCGACA
TTGCTCCCCG CCTGCGTTGC GCTGCGCGAT CTCCTGGCGC GCACCGGCGA CCTTGCCGCT
GCCGTCACGT GGGCGCAGCG TGCGGTTGCG CTCGCTCCCG ACGATGTGGC GCATCTTGTC
CGGCTCGGTG AACTGTCGCT GGCGACGGAT GATCTGATAC AGGCGGAGCA GGCGCTGCAC
CATGCTCTTC GCCTGAGCGA TCGCGCCAAT GCCGGGGAAC AGTCAGACCG CGCTGTTGCC
CACATCTACG CATTGCTCAG TCGTGTGCGC GCTCGCGCTG CCGATTGGGA ACAGGCTATC
ACGTATGCGC GCGCCAGTAT TGATCGTGCA CCTGGAAACA GCGAATATCG TGCCCTGCTC
GCCGATGCAC TGGAAGGGAA GGGCGATCTG GCGGCGGCGA TTGCAGAACT GGAAGGCGCT
GCGGCTGCTG AGCCGGAACG CATCGACTGG CAGCAGCGTT TGGGGCGTTT CTTCTACCGC
ACTGGCAACT ATGCAGCGGC GCTGAATGCG TTGCGCCGTG CAGCGGCGGG GTCTGGCGCC
GCCGATGATT ATCACGCGCT TGGTCTGTGC CTGCGCGCGC TCGACAATCT GCCCGCCGCC
GCCGAGGCGC TCGAACATGC GCTGCATCTG CGACCCGATG CAGCCGCCTG GCGGATCGAC
CTGGCGCTGG TGCATCTGGC GCGCGGCTGG CACGGTGAAG CGCTCGCCGA ACTCAACCAG
GTGATCGCAA CCACGCCGGA TCTTCCGGGT GCGTGGCGCG CGCGCGCCCA CGCATTGCTG
GCGATCGGTC AGCACGAGAA GGCGCGCGCC GATCTGGTTG AAGCGCTGCG CCGCGACCCG
CGCGACGCCG AAAGTTACAC ACTGCTCGCC GAAACCCTGC TTCATCTGGG ACATGCGACG
CATGCGCTGG AGAGCGCCCA ACGCGCGGTT GCCCTGCAAC CCGCTGAACC GCAGCACCGA
CGTCTGCTGG CGCGTGCGTT GCGCGCCATC GGTCAACGTG CCGAAGCTAT CGAACAGCTC
AGCAGCGTGG TGAACGATAC CAGCCCGGCG GAGTGGTGGG CGGAACTTGC CGATGATCAT
CTGGCGCTCA ATCATCTCGC CGCAGCGCGC GCCGCACTTG AACGTGCAGT CGCCGCCGCG
CCGGACAATG CCGTCGTTCG CTTCCGGCTC GGTAACGTGC TCATGCGGAT CGGTGAGCCG
GATGCCGCCG CTGCCGAATT GCGCGTCGCT ATTGCACGCC GCCCCGATTA CGCTGCCGCA
CACGCCCGCC TGGCAGAGGC GCTGATCGCC TGCAACGATG GTTGTAGGGA GAATCTTGAG
TCCGCTGTCG AAGCAGCGCG ACTCGCCGTG GCGCTGGAGG GGCAGTGCGC CGATCACTGG
CGCGTCCTCG GCATGGTGCT GCGCGCACAG GGGGCGCATG CAGAAGCGGT CGATGCACTG
CGCCGCGCCC ACGAACTCGA TCCAGAGTCG GCGCCGGTCG CTTTTCTGCT CGGACTGACC
CTGCTCGAAC AGGGACAGGC GACTGCAGCG GTTGCGCCGC TTACCGCCGC TGCCGCCGCC
GCGCCGGAGG AAGCCGCGCA TCACGGGTAT CTCGGCATTG CGCATCGCAT GACGGTTGCG
CTGATCACCG AGCCGGATGA ACTGCGCGCC GCGTCTGCCA GCCGGCGCGC AACGTTGACG
GTTGCCCGGC GATCATTGCA CCGGGCGATC ACCATCGATC CACACTGCGC ACTCTGGTGG
TATGAACTCG GTCTCGCCAT CCAGCAATCG GCAAGCCATG CCGCCGCCGT CGAGGCGTTT
GATCGGGCGT TCACCTGCGC TGGCAGCGAA ACTGCTGGTT GTGCGCCCGG CATCTACCCG
CCGCCCAAAA CCATCGATCA AACGGCGATC CGGCGCAGTC GTGCACGCTC ACTCTACCTG
ATTGATCGTC TCAACGATGC GCGCGCCGAT CTTGAAGCCC TGATTGCACA CGAGGCGGCG
CTTCCCGCCG ATCACTACCT GCTGGGGCGC ATCCTTCTCG ATCAGGGCGA AACGGCTGCC
GCACGCGCGG AACTGACCGC CGCACTGGTC GATCCTGCGC ATGTCCAGGC GCGACTGTTC
CTCGGACGCG CCTGCCTGGC GCTAAATGAG CCGCACCCAG CAATCGAAGC CCTCGAACAG
GCTGTCGAAC TGCGCCCCGA TCACGCGCCG ACCGCTGCCG CACTCAGTCT GGCGTATGCT
GCTGCCGGTC GGCGTGAACG TGCGATCGCC GCTGCGCAAC GCGCCGTTCG GCTCGATTCC
TCGGTCGGCG CGCATCATCA GGTGCTGGCG ACGCTCTACG CCGCCAGCGG ACGGTTCCAG
GAAGCGCGCG CCGCACTGAT CAACGCACTG ACCCTGCAAC CCGATGTCGC CGCCTGGCAT
GCGCAAATGG GCGAGATCTG TCAGCAGATG GGACTGATCG ATGCTGCACG TAGCGCGTAT
GCGCGCGCAA TCCAGCTGGC GCCTGACAAC GCCGACTATC GCCATGCCCA GGCGCGTCTG
CTGATCCGGC AGGGGCGTAC CGCCGAGGCG CGTCAGGTCT TCGAGGAAGC GGTGAAACGC
GAACCGCACC AGGGCGCCTG GCGCTATGAA CTGGCGGAAC TACTCCGTCA GCAGGGTGAT
CTCACCGCGA TCGAACACTA CGCCGCCGCC GTGCAACTGG CGCCCGACGA GCCACGTCAC
TGGCTGGGGC TGGTGGAAGG GTTGATCGCG CGTCATGAAC GCGACGCTGC CCGCGAAACC
GTCGAGCGGG CGCTGCTGCG TTTCGGCGAT AATCCGGCGC TGCACAGCGC CGCAGGTGCG
ATCTACGAAG CGCAGGGCGA CATCGAGCGC GCGGCGTGGC ACTACGGGCG CGCATTCGAG
CGTGACCCGC AGAACGCCGG GAATTGCTGG CGGTTCGGAC GCGCCCAACT CGAACTGGGC
AGGCTGGATG CCGCGCGTGA GTTGCTCGAA CGCGCGCTGG CGCTTGACCC CGATTCGGCA
GACGCGCACG CGGCAATAGC GCGCTTCTTC GCACACACCA ACGATAGCCG CGCTGCGCTG
ATCCACAGCC AGCGCGCTGC CGAACTGCGT CCCGATGAAC CGGCGTTCCA GATACAACTC
GCAGAGGCGC TCACACATCT CCGGCGCTTC GACGAAGCGC GGCAGGCGCT TGAACGCGCA
TTGCAACGCA TTCCCGACAA CCCGGAATTG CTGGCGCGCT ACGGCGAGAT GGCATTGACA
GTCGGTTTGT ACCACGAAGC GCTCAGCGCA TTTGAGCGCG CTATCGCCCA ACGACCCGAT
GAGCCGCGCT ACCACTTCCT GGCAGGGCGG GTACATCGTC GATTGAAGCA GTACAGTCGG
GCGATCGAAC GGTTCCGCCG CGCGGTCAAA CTGCGTCCTG GCTACAGCGA GGCGGTTATT
GAACTGAGCA CCCTCGGACC GCTGGCATTC GTTGCTCAAC ACTTGCGTGG CGAGAGCGAC
GCTGCTTGA
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| Protein sequence | MAAQLAGWAH RYLEALCAQP HFSAARTVAP LWLATDSGLP AEPGAPIAAP LTIQMAAEIF
PRLALIGPAG AGKTTTLRAL AIGLAEAFLS GNSRAAWGNA NAPLPLYIEL ARFQGSVEAT
LATEFGVGDP PPLEELARER PLLFLLDGLD ELPPATQLAS LAALSHALVA TGAQTRWIST
CRSEFLGLFR PWLNGAEVRT LQPLRPRDVI AQVQRQAGDV AAAWIQRNDD IVHLATRPRW
LTALIEARDV LNAPIQSRGQ LLATWIPAVA AAALLAHPRM ISSTQAVHAL IEIARMLDQQ
TQETLAIDAA IAAIEVSAYV PDAHLTTRMA HQSAPVNGRT LRATTGEAAL QTLIDAGILV
FDAERRTVSF RHPILRSFAQ AMLLARTNPD QWSPATLSRA WMDAVIFAYS LSDDREAVLR
RLLAVGAVGL TARCLIDAEA PVHYDELLER SGTLTPPLRV MIADAFAAEG LERAALEQLE
RAGAEGYDEA GLFGRLGDLY SRSGQWRLAR IAYEQALARE ADDLRYRQQL GVVCSRMGEL
DQAAAALEAV LDTQQKRLAA AAHELGHVYL QQGRFVHALE AYRHAAQQQP GDPAYRRSVA
TALRRLKRID EAEAQLRSLI AESGGDAATY AELGEVYADA GRCVEAIESY ARAVALRSDD
PSLYARLGQL RHSAGDLPGA RAALQRAVEL DPSDAGLHDE LGQIFEACGE TGNALAAYRA
AVSLDPQCDA YHRRLGALLR DCGDDDGAAA ALRTALELRP DSAETYGELA ELLWRSGESE
KALDACRRAY ALAPTSPDHA RALGLAYHRV GRARDAERTL RDALALAPDR ADLHFDYGMV
AESIEQWDAA LAAYERAAML APQRADYARA AGALLLRRGE LKRARTLLAG ALRRARRDPE
TLFQTGLLHV AAGAWHLAAR SFQRAVRLSG GARYESALGR AYLRLGRAED ACAALERALH
TNPDDVETLD TYREALEACG RLEAAYTVGR RVARLAPGNA VIQQRAGSIA LRLGRVNEAL
ELLDHAVALD SRLVPAHSER SRALLASGRA GAALAAANQA HALAPDLPEP LALAAEALIA
LQRDDEARPL LEQALALDAT LLPACVALRD LLARTGDLAA AVTWAQRAVA LAPDDVAHLV
RLGELSLATD DLIQAEQALH HALRLSDRAN AGEQSDRAVA HIYALLSRVR ARAADWEQAI
TYARASIDRA PGNSEYRALL ADALEGKGDL AAAIAELEGA AAAEPERIDW QQRLGRFFYR
TGNYAAALNA LRRAAAGSGA ADDYHALGLC LRALDNLPAA AEALEHALHL RPDAAAWRID
LALVHLARGW HGEALAELNQ VIATTPDLPG AWRARAHALL AIGQHEKARA DLVEALRRDP
RDAESYTLLA ETLLHLGHAT HALESAQRAV ALQPAEPQHR RLLARALRAI GQRAEAIEQL
SSVVNDTSPA EWWAELADDH LALNHLAAAR AALERAVAAA PDNAVVRFRL GNVLMRIGEP
DAAAAELRVA IARRPDYAAA HARLAEALIA CNDGCRENLE SAVEAARLAV ALEGQCADHW
RVLGMVLRAQ GAHAEAVDAL RRAHELDPES APVAFLLGLT LLEQGQATAA VAPLTAAAAA
APEEAAHHGY LGIAHRMTVA LITEPDELRA ASASRRATLT VARRSLHRAI TIDPHCALWW
YELGLAIQQS ASHAAAVEAF DRAFTCAGSE TAGCAPGIYP PPKTIDQTAI RRSRARSLYL
IDRLNDARAD LEALIAHEAA LPADHYLLGR ILLDQGETAA ARAELTAALV DPAHVQARLF
LGRACLALNE PHPAIEALEQ AVELRPDHAP TAAALSLAYA AAGRRERAIA AAQRAVRLDS
SVGAHHQVLA TLYAASGRFQ EARAALINAL TLQPDVAAWH AQMGEICQQM GLIDAARSAY
ARAIQLAPDN ADYRHAQARL LIRQGRTAEA RQVFEEAVKR EPHQGAWRYE LAELLRQQGD
LTAIEHYAAA VQLAPDEPRH WLGLVEGLIA RHERDAARET VERALLRFGD NPALHSAAGA
IYEAQGDIER AAWHYGRAFE RDPQNAGNCW RFGRAQLELG RLDAARELLE RALALDPDSA
DAHAAIARFF AHTNDSRAAL IHSQRAAELR PDEPAFQIQL AEALTHLRRF DEARQALERA
LQRIPDNPEL LARYGEMALT VGLYHEALSA FERAIAQRPD EPRYHFLAGR VHRRLKQYSR
AIERFRRAVK LRPGYSEAVI ELSTLGPLAF VAQHLRGESD AA
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