Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_0679 |
Symbol | |
ID | 5207617 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 845692 |
End bp | 846234 |
Gene Length | 543 bp |
Protein Length | 180 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640594293 |
Product | hypothetical protein |
Protein accession | YP_001275046 |
Protein GI | 148654841 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00667306 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0312007 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCCAGG AACAAACATC ATCCCAGAAA GTTGATACCG GTCCGCTGCC GCCGCTGCCG CCCCTGCCGG AGCCGCCGCC GCCGCGTCGC CGTGCACCGC AGTGGAATGT CATTGCACTC GGAGCGGTTG CGCTGGTTGT GACGGGGCTT GCGATCTGGT GGTTGACCCG TCCGCCTGAC CCGATGAGCG ACCCGCGACC GGTGCAGGTA GTGCAGAACT TTGTTGCTGC CCTTGAAGCG CGCGATGTAT CGCGGATGCT CTCCTACATC GAGCCAACCG ATATCAAACG ACAGATCAGC CCGGAACTGC GCTCGTACAT GGAGTACATC ACCGACCTTC AATTCGATGA TGAGACCTAT ACGCTGCTTG ACAATAACGG CTCGATTGCG CACGTCCGGT TGACCGGTAC TGTGCGCTAC ACCGTTGATT ACGGTACGGT GTATTCGGGT GAACGTCCTT TTGATACCGT TTTCGAACTG GTGTTGCTGG AGGGGGCGTG GTATCTGCGC AGCCTGCAAC TGCCGGCAAC GGAACAGCAA TAG
|
Protein sequence | MTQEQTSSQK VDTGPLPPLP PLPEPPPPRR RAPQWNVIAL GAVALVVTGL AIWWLTRPPD PMSDPRPVQV VQNFVAALEA RDVSRMLSYI EPTDIKRQIS PELRSYMEYI TDLQFDDETY TLLDNNGSIA HVRLTGTVRY TVDYGTVYSG ERPFDTVFEL VLLEGAWYLR SLQLPATEQQ
|
| |