Gene RoseRS_0425 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_0425 
Symbol 
ID5207361 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp543730 
End bp544209 
Gene Length480 bp 
Protein Length159 aa 
Translation table11 
GC content63% 
IMG OID640594051 
Productpeptidoglycan-binding LysM 
Protein accessionYP_001274806 
Protein GI148654601 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00647142 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.149845 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACTCG GGTTGACGAG TATCTGCCAG CATACCGGAC ATCGTATGAT CCGCATTGTC 
CTGATCCTGA TCCTGACGGC ATGGTTGTCG GCATGCACAC TCCCTGCGCC GCCACAACCG
ACAACCCCGC GCCCGACGGC GCCGGTCATT CTTGAGATCA CTCCAGCGCC GACGCTGGAT
GTGGACGCCA CTGCGACCGC ATATGCCACA TTGCTCGTTC CCTCACCGAC GCCAGCCGGG
CTGTACATCG TTCAGCCGGG CGATACGCTG AGCGAACTGG CAATCGCATT CGGCACAACG
GTTGCTGAGA TCATGGCCGC CAACGGCCTG ACCGATCCTG ATTCATTGCA GGTCGGGCAA
CCGCTGATCA TCCCCTCGCT GGTGGATACA TCGCCGTCGC TGCGGGCAAC GCCGACCCTT
AGTGCGGGGA CGGCGGATCA AACTCCGGCG CCGGCAACCC CGACACTGGC GACCCCGTAG
 
Protein sequence
MALGLTSICQ HTGHRMIRIV LILILTAWLS ACTLPAPPQP TTPRPTAPVI LEITPAPTLD 
VDATATAYAT LLVPSPTPAG LYIVQPGDTL SELAIAFGTT VAEIMAANGL TDPDSLQVGQ
PLIIPSLVDT SPSLRATPTL SAGTADQTPA PATPTLATP