Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_0425 |
Symbol | |
ID | 5207361 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 543730 |
End bp | 544209 |
Gene Length | 480 bp |
Protein Length | 159 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640594051 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001274806 |
Protein GI | 148654601 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1388] FOG: LysM repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00647142 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.149845 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACTCG GGTTGACGAG TATCTGCCAG CATACCGGAC ATCGTATGAT CCGCATTGTC CTGATCCTGA TCCTGACGGC ATGGTTGTCG GCATGCACAC TCCCTGCGCC GCCACAACCG ACAACCCCGC GCCCGACGGC GCCGGTCATT CTTGAGATCA CTCCAGCGCC GACGCTGGAT GTGGACGCCA CTGCGACCGC ATATGCCACA TTGCTCGTTC CCTCACCGAC GCCAGCCGGG CTGTACATCG TTCAGCCGGG CGATACGCTG AGCGAACTGG CAATCGCATT CGGCACAACG GTTGCTGAGA TCATGGCCGC CAACGGCCTG ACCGATCCTG ATTCATTGCA GGTCGGGCAA CCGCTGATCA TCCCCTCGCT GGTGGATACA TCGCCGTCGC TGCGGGCAAC GCCGACCCTT AGTGCGGGGA CGGCGGATCA AACTCCGGCG CCGGCAACCC CGACACTGGC GACCCCGTAG
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Protein sequence | MALGLTSICQ HTGHRMIRIV LILILTAWLS ACTLPAPPQP TTPRPTAPVI LEITPAPTLD VDATATAYAT LLVPSPTPAG LYIVQPGDTL SELAIAFGTT VAEIMAANGL TDPDSLQVGQ PLIIPSLVDT SPSLRATPTL SAGTADQTPA PATPTLATP
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