Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_0138 |
Symbol | |
ID | 5207070 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 172112 |
End bp | 174310 |
Gene Length | 2199 bp |
Protein Length | 732 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640593767 |
Product | alpha amylase, catalytic region |
Protein accession | YP_001274526 |
Protein GI | 148654321 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTACTT TCACCCTGCG TTCCACCCGC CACGCACTGA TTGTGACCCT GGCGGAACTC GAACTTGAGT TCTCTCTCGA CGATGGCGGG TTACGGGCAC TGCGCCGACC GGGCGGACCG GACGTGATCG GGCGTGGCGC ACCGCATACG GGCGTTGATG TCTCGCTCGC GGAAACCGGC TGGTTGACCC AGCGTTCGTT TGCTCGCTAT CTCAACCATT TTCTCTACGA TATTCCTGGC GGCGTCGAAA TCGTGATCGT CGTCGGTCTC GGTCCACTGA AGATCTACGA CCGCTACCGT GCAGTCGGTT CGTTCATAAC ACGCCGTATC AGTATCGAAA ATACCGGCGA CGATGAACTG GCGTTGTGTG GAGTGCGCCT GACGATCAGC AACGCGTGCG TCGGCATGCC GGAACGCTGT CGCTTCGAAG CGCCGGCAAA TGTGATCCGT CCCCGTCTGC CGATTGCTCG CCTGCGCGGT GACCCGCACC ACCGTCACTG GTCGGACACA TCGGCGCTGG AGATCCCGGC GTTTGCTCTG GCGCCCGCCG ATGCGCCCGG TTTGCTCGCC CTGCACAACG ACATGGTTGG CGAAACGCTG GCGTGCTGGT ACAAAGACCC CTCCAACGCG GCGCGTCCGC GGGTGGAAAG TGATGGCAAC GCTGTCACAC TGTTTCACGA CATTCGCATC GCGGAGCGCC TGCGGGTTGA GGTGGCGCTA TCCGTTGGGG TGCAGGCGCT GCTGCTGGAG CGCGCACCCT GGCACAACGC CCTGCCACGG ATCCATCAGG TGATGACGCG CAGCCGGGCG AACCCGGCAA CACCGCCCGA ATGGGTGGCG GACGCAGCCG TGTTTGTGAC GCATCCGGCG CATTTCGGGG GCGCCTGTGG ATTAATCGAG GCGCTCGATG CCATTCAGCG CCTGGGTTGC ACCGCACTCT GCCTCCTGCC GGTTCACGAT ATTGCCGCCC CACGTCAGTA CACGGAAGAA TGGTCTCCGG CGCAACCGGA GGACCTCTAT GCGCTACGCT CGTTTGCGAT GCTGGCGCCA GAGATCGGAG GGATCGAAGG ATTGCGCGAT GTTGTGGCTG CCGCTCATGC GCGCGGGATG CGGGTGATCC TCGATCTGCC CCTCTCCGGC TGCGCCGCTG ACTCGCCCTA CGTATCAGAA CATCCAGACT GGTTCTGCCT GGATCAGAGC GGACAGTTCA TTCGCTTTGC GGGGGAGGTC GATACCTTCT ATTTTGACTG GCGCAATGAT GCCCTGCGCA CCTATGCCGT CGGTGAGCTG ATGATGCTGA TGGAACAGAG CGGTATCGAC GGTTTTCGCG TGCTGGTTGC ACGCGATGTG CCGCCGGGAT GGCCCCTTGG CGCAGCGATC AGCGGCGGCA GCAGTATGGG CGTGGTGCGT CTGATCGAGA TGTTGTACGC CGCAATGCGC CAGGTTCGAC CCGACGCGGC GCTGGTCACC GATCTGGCAG GACCGATGCT TGCGCCCTGT CGGGATCTGA TCATCGACAA ATCGGCGCAC CATATGTTTA CCTATCTGGC AATTGGAACG CTTGGCGCAG CTGAGATGCA GGAGTGGCTG ATCGACAACC TGGCGATCGG TGATTCGGGA GGGCTGCGTG CGTGTTTCAC CGAAAGCCAT CATTCGTGCG TGAGCAATCC GCTGGCTGAT GTACTCCGGG GTTCACGCCC GGCACGCATG ATCCTTGCTG GCATGGTAGG GTGCGGCTAC GTGCCGTTGA TCCGCGCCGG TCAGGAACAG GAACCCGGCG ACCGTGACGG TATCACCCGC CTGCTCCACG CACGGGCGCG CAGCGTTGCG TTGCGCCGCG GCGCAATCGA TCCGAACGGT GTGCGCTGCG ACGACCCGGC AGTCTTTACG GTGCTGCGAC GACACCCGGA AGAGTGTGTT GTCACGCTCC TGAACGTCAG TCCCCTCCAT CGTCAGGTGA CGCTTGCGTT GCCGCTTGCA GACCTGCCGG ATGGCGACTG CCTCATTGAT GACCTGCTCG ATGGCGATCC GCCGCAGAAC TCAACGGATG CGCTTCGGCG CGACGATCTG GCGGCATTGT CGATCACGCT GGCGCCATTC GCCGCGCGCA TGCTGGCGTT GCGTCCCGCA CCGCTGCATC CCGACAACGG CATTGTCGAT CACACCGTTC ATTCGGATAA CGTATCACGA GAGTCGTAG
|
Protein sequence | MATFTLRSTR HALIVTLAEL ELEFSLDDGG LRALRRPGGP DVIGRGAPHT GVDVSLAETG WLTQRSFARY LNHFLYDIPG GVEIVIVVGL GPLKIYDRYR AVGSFITRRI SIENTGDDEL ALCGVRLTIS NACVGMPERC RFEAPANVIR PRLPIARLRG DPHHRHWSDT SALEIPAFAL APADAPGLLA LHNDMVGETL ACWYKDPSNA ARPRVESDGN AVTLFHDIRI AERLRVEVAL SVGVQALLLE RAPWHNALPR IHQVMTRSRA NPATPPEWVA DAAVFVTHPA HFGGACGLIE ALDAIQRLGC TALCLLPVHD IAAPRQYTEE WSPAQPEDLY ALRSFAMLAP EIGGIEGLRD VVAAAHARGM RVILDLPLSG CAADSPYVSE HPDWFCLDQS GQFIRFAGEV DTFYFDWRND ALRTYAVGEL MMLMEQSGID GFRVLVARDV PPGWPLGAAI SGGSSMGVVR LIEMLYAAMR QVRPDAALVT DLAGPMLAPC RDLIIDKSAH HMFTYLAIGT LGAAEMQEWL IDNLAIGDSG GLRACFTESH HSCVSNPLAD VLRGSRPARM ILAGMVGCGY VPLIRAGQEQ EPGDRDGITR LLHARARSVA LRRGAIDPNG VRCDDPAVFT VLRRHPEECV VTLLNVSPLH RQVTLALPLA DLPDGDCLID DLLDGDPPQN STDALRRDDL AALSITLAPF AARMLALRPA PLHPDNGIVD HTVHSDNVSR ES
|
| |