Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_0120 |
Symbol | |
ID | 5207053 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 140964 |
End bp | 144251 |
Gene Length | 3288 bp |
Protein Length | 1095 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640593751 |
Product | TPR repeat-containing protein |
Protein accession | YP_001274510 |
Protein GI | 148654305 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGTTACGTC CATCTCCTGT CGCAGTCTGG TGCGAGCGTG TGATCGAGGG TGGATGGTTG CTCGCGCTGC TCCTGATACC AACATACTTC AATCTGCTGT CAGCCCGTCA CTTCGAGCCG GATAAAGCCA CGACGCTGCG CTCGATTGTG ATGATCATGC TGGCAGCGGC GCTGATCCAT GCACTCGAAA AAATCTCTGC CTCACGCCCT CCTGCCGACG GGGACGCAAA CGGCGCCTCC TGGTGGCGTC GTGTCGCCGC TGTGCCGCTC GCTGTTCCAA CCCTGATCTA TGCTGCGGTC TTCGTGCTGG CGACAGTGGT GTCGGTCGCG CCAGCGGTCA GTTTCTGGGG GTCCTACCAG CGCTTGCAAG GCACATTCAC GAACCTCTCC TATATCATGC TCGGCGTCCT GATTGCGCTC TACCTGCGTC GTCGCGCGCA ACTTGATCGC CTGGTCGTCG TGATGATCCT GTCCAGCCTG ATCGCCGCTG GCTACGGTCT CGTGCAGCAT CTTCAGCTCG ATCCGCTCCC CTGGCGCGGC GATGTGGTGT CCCGCGTCGC TTCCACGATG GGAAATTCGA TCTTTGTGGC AGCGTACATG ATCATGGTGC TGCCCTACGC GCTCTATCGC GGCATTATTG CCGTGCATCA TGCGCGCAGC AGCCAGGTCT CCCCTTCGCA GCCGTCGGTC GATCTCGGAT GGGGAGCGGC GTATGCGCTC CTGGCGCTGG CCGCGCTGGC GCTGGTTTTC GCCGCCATGA TGTTCAGCGC AGTGGTGCGC GCCGCCGATC TGCGCTACTG GTGGGTCTAC CCCGGTGCGC TGGTGGTTGC GGGCGGGTTG TTTCTGCTGA TCGCACTGGC GCCGCACCGC GCTGAGCGCC TGACATTCGG GACGCTGATA CCAGGCATCC TGCTGCTCGG ATACGTCATC CTTCTCGGCA TTTCGTATAC GCTGGGGCAG GGACCGAACC AGCGGGTGGT TCCGCTGGAG GGGCGGCCGG GGGTTGAGTG GCCACTCTGG TTGGGGATTG CGACCGCGCT CATGACAGCC GGTTATGCGC TGGTGATTCT GCTTCCGCGG CGCCCCGACA CTCCATCGCG CCTCAGTTAC GCACTCGAAG CGGTCGGTGC ATTCGTGATC ACAGCCCTGC TGCTGATCGC CACCTTTTTT ACCCAGAGTC GCGGACCCTG GATCGGCGGC TTTGCAGCCC TGTTTGTGTT CTTTACCCTG CTGATTGTGC TCGCGTTGCA CCGGGCGCGT CGGGATAACC CGGCGCGTGT GCGACTCTGG CGCGGGTTGC TGATCGGTGA AGTGACGCTG GCGATTGCGC TGGGCGGCTT CCTGGCAGCC TTCAACCTTT CTGATGCGCC GGTCTTTCAG CAGTTGCGCG ATGTTCCGTA CATCGGTCGC ATGGGGCGTC TGCTCGAAGT GGAGAGCGGC ACAGGACGGG TGCGCTGGTT GATCTGGTTC GGCGATGATA AAGCCGGCGG CGCCGCCGGT CTCATCCGCT CCGACCCATT GCGCATGATC GTCGGATGGG GTCCCGAAAC CATGTTTGTG GCGTACAACC CGTTCTACCC CCCATCGCTC ACCAGCCTCG AAGCACGATC AGCATCGCCG GATCGATCCC ACCAGGCGTA TCTCGATGAG ATCATCAACA AAGGGTTGCT CGGGCTGATC AGTTACCTCT TTCTCCTGTT CAGTTTCTTC GCGCTGGCGT GGCGTCTGAT GACGCACCTG GACGATTGGG GGTTGCAGGT GCTGATCATC GCTGCGGTTG CCGCCGTGAC GGCGCACGCG GTTGAGGGAT TGACCGGCAT CCCGATTGTA TCGACGTTGA TGCTCCAATG GGTGTCTTTT GCGGTTGTCG TGTCTGCTGG CGGAATCGCC GGCATGTACC GCCTGCCCGG TATGCCGCCT GTACAGACCA TGCCGGAGAA GGCATCAGCT TTGCCTGGAG CGCCAACTCC CGATAACGCG ACCCGTTCAA GCAGAACGCC GAAAGACAGA GCGCCGGAGA AAGCGACAAC ATCTGCCCGT CAGCGCAGCG GGCGACGCGC CGAGGCGGTC AGGCGCGGAT CGTCGCCTGC TCGACCGGCT GCGTCACGCA CCCGCCAGGA AGGGCGTGCA GCGGCGATGG CCGTGTACGC CGTGATTCTC ATCATCGCCC TGCTGGGCGT CTGGGCGTTC AATGTGGACA GCGTGCTCGC GGATATGCGG CTGCAACAGG CGCAGGGGTA TATCGACAAT CCGGGCGGCA GGCTGGAACA ACAGATCATC GGCGCCAGTT ATCTGCTCGA CGCGATCCGC ATGGAGCCGG ATCAGGACTT CTACTACCTG ACCCTTGGTC GGTCGCTGAT GACCATGGTC ACGCTGCGCG TCAATGAGGC GCGCCAGAAC GGTGCATCGC TCGGTCAGAT CGACCCGAAT GCCAGCGTTG CAACGCTGCT GCAACTCGAT GACACGGCGG CGCTGCAGTC GTTTGTGCTG CAACGCACGC CGATGGAACT GCTGAGTTAT GCCCGCGCCG TTCTGCTGCG CGCGCAGCAA CTGGCGCCGC TCAACAAGGA TCACGCTGCC AACCTGGCGC GCATGTACAA TTTCTGGTAC CAGAACCTGA GCGGTGGTCA GGATCGCGAA GCGCTGACGC AGGCGATAGA ATGGTATCAA CGAGCGCACG CAATTGCGCC ACAGGATGTC GCCATTCTGA ACGAGTACGC TGCCGCCGTC GCCCGATCCG GCGACTACGA TCAGGCGCTG GCGTTGCTCG AAAAGTCGCG CTGGCTCGAC CCGCTCTACA ACGATACGCC TCTGCGGATG GGCGACATCC TGCGCACGCA GGGGAAATTC GCCGACGCTG TCGATCACTA CCTGATGGTG CTGGAGCGTG ACCCGCGCGC GCTCGATGGG CAGATCACCG CCATCGCCGC AGCGCTCTCC TCTGATCCTG ATCAGATGAA ACGCCTGCGC GACGGCTACC TGGCGGCGCG ATCTTCCCGC CCCGATGACC CGCAACTGTC GTCGATCATC GGATTGCTGT CGGTGCGCGC TGGCGACCTC GAAACCGCTG CAACCGCGTT TGCCGAAGCG GTACGCTTGC AACCGGACAA CCTGGAAGCG CGCCAGAACT ACACGATCGT GCTCAGTGAT CTGCTGCGCT ACGATCAGGC GGCGCAACAG GCGCAGGAAC TGTTGACGCG TGCGGCGCAA CGCCAGGAGA CGACCGACCA GCAGCGCGCT GCGATCGAAG CCTTGCTCGG TTATCTCCGA CAACGCGCGG GCGGTTGA
|
Protein sequence | MLRPSPVAVW CERVIEGGWL LALLLIPTYF NLLSARHFEP DKATTLRSIV MIMLAAALIH ALEKISASRP PADGDANGAS WWRRVAAVPL AVPTLIYAAV FVLATVVSVA PAVSFWGSYQ RLQGTFTNLS YIMLGVLIAL YLRRRAQLDR LVVVMILSSL IAAGYGLVQH LQLDPLPWRG DVVSRVASTM GNSIFVAAYM IMVLPYALYR GIIAVHHARS SQVSPSQPSV DLGWGAAYAL LALAALALVF AAMMFSAVVR AADLRYWWVY PGALVVAGGL FLLIALAPHR AERLTFGTLI PGILLLGYVI LLGISYTLGQ GPNQRVVPLE GRPGVEWPLW LGIATALMTA GYALVILLPR RPDTPSRLSY ALEAVGAFVI TALLLIATFF TQSRGPWIGG FAALFVFFTL LIVLALHRAR RDNPARVRLW RGLLIGEVTL AIALGGFLAA FNLSDAPVFQ QLRDVPYIGR MGRLLEVESG TGRVRWLIWF GDDKAGGAAG LIRSDPLRMI VGWGPETMFV AYNPFYPPSL TSLEARSASP DRSHQAYLDE IINKGLLGLI SYLFLLFSFF ALAWRLMTHL DDWGLQVLII AAVAAVTAHA VEGLTGIPIV STLMLQWVSF AVVVSAGGIA GMYRLPGMPP VQTMPEKASA LPGAPTPDNA TRSSRTPKDR APEKATTSAR QRSGRRAEAV RRGSSPARPA ASRTRQEGRA AAMAVYAVIL IIALLGVWAF NVDSVLADMR LQQAQGYIDN PGGRLEQQII GASYLLDAIR MEPDQDFYYL TLGRSLMTMV TLRVNEARQN GASLGQIDPN ASVATLLQLD DTAALQSFVL QRTPMELLSY ARAVLLRAQQ LAPLNKDHAA NLARMYNFWY QNLSGGQDRE ALTQAIEWYQ RAHAIAPQDV AILNEYAAAV ARSGDYDQAL ALLEKSRWLD PLYNDTPLRM GDILRTQGKF ADAVDHYLMV LERDPRALDG QITAIAAALS SDPDQMKRLR DGYLAARSSR PDDPQLSSII GLLSVRAGDL ETAATAFAEA VRLQPDNLEA RQNYTIVLSD LLRYDQAAQQ AQELLTRAAQ RQETTDQQRA AIEALLGYLR QRAGG
|
| |