Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_0091 |
Symbol | |
ID | 5207024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 104234 |
End bp | 108073 |
Gene Length | 3840 bp |
Protein Length | 1279 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640593723 |
Product | DNA polymerase III, alpha subunit |
Protein accession | YP_001274482 |
Protein GI | 148654277 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00483462 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.136645 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGATT TTGTCCATCT GCATGTTCAC TCCGAATACA GTCTGCTCGA TGGCTACGCT GCCACAAGCG CCATCGCTGC GCGCGCCGTC GAATTGGGGA TGGACAGCAT CGCCCTGACC GACCATGGCG TGATGTATGG CGTCATGGAG TTCTATGCCA GCGCAAAAAA AGCGGGCATC AAGCCGATCA TCGGGCTGGA AGCGTACATG GCGCCCGGAT CGCGCCGCGA TGCAACGAGC CGTGGCGCGA AGAACTACTA CCATCTGCTC CTGCTGGCGA AGGACGAGGT CGGCTACCGC AACCTGGTGC GCCTGACGAC GCGCGCCCAC CTCGATGGCA TGGGGAAGGG AGTCTTTGCC CGACCGCGCA TTGACCGGGA ACTGCTGGAG CAGTATCACG ACGGCTTGAT CGTCACATCC GCATGCATCG CTGGCGAAGT CATCCAGCGA CTGACCGAAA AGCAAAAGGA TCAGGCGCGT GAAATCGCCG CCTGGTACCG CGACCTGCTT GGACCCGACA ACTATTTCCT CGAACTGCAA CTGCACGAGA ACACGCCGGA GCTTGAAGAG ATCAACGATG AACTGGTGCG TATCGGGAAG GAACTGGGGA TTCCGCTGGT GGTCACCAAC GACACGCACT TTGTCCGTCC GGAAGACCTC GAAGCCCACA AGATGATCCT GGCGCTCGGC TACAACATGA CCCTCAAGGA GTTGTGTGCG AAGAACTATC AGATGGACGC CACCTACCAC ATCATGTCGG GCGAAGAGAT GTGGCGCCGG TTTAAGAAAT ACGGTACGAC GCCGCTCGAA AATACACGCC GCATTGCCGA GCGCTGCAAC CTGACCCTGG AGTTCGGGCG CGTCCAGCTG CCGACGATTG ATATCCCCGA AGGACACGAT GCCGCCTCCT ATCTTCGCCT GGTGTGCGAG GAAGGATTGA TGCGCCGCTT CAATGGTCAT CCGCCGGAAG AGTACGTCAA ACGCCTGGCG TATGAGCTCG ATGTGATTAA CCAAACCGGC TTCCCCGACT ATATGCTGAT TGTCTGGGAC TACGTCAAGT TTGCGCGGGC GCGTGGCATT CCCTGCCTGC CGCGCGGGTC GGCGGGCGCA TCGTTGATCC TCTACTGCCT GGGCATTACC GATGTCGATC CGGTGAAGAA CAAACTCCTC TTTGAGCGCT TCCTCAGCCC GGAACGCCTG GAGATGCCGG ATATCGACAT CGATTTCGCC GATAGCCGCC GCCACGAGGT GCTGGAGTAC ATCGCGGCGA AGTATGGGCG CGAGAACACG GCGCAGATCA TCACCTACGG TACGCTCGGC GCCAAAGCCG CCCTGCGCGA CATCGGGCGC GTCCTGGAGA TTCCGTTGAA TGAGGTGGAT CGCGTTGCCA GACTCATCCC GGCGCTGCCG GTCGGAACCA CGATTGCGCA GGCGCTTGAA CGGGTGCCGG AGTTGAAACA GATCTACACG ACGAACCCGG ACCTGGCGCG GCTGATCGAT TGGGCGCAGA AAGTCGAAGG GCGCATGAAA AGCGTCGGCA CGCATGCCTG CGGTGTGGTC GTCAGTCGCA CGCCGCTCGA AGACATTGTG CCGCTGCAAC GCACCACAAA GGACGAGAAC GCGCTCATGG CGGCGTTCGA GGGTCCAACG TTGCAGAAGA TGGGTCTGCT GAAGATGGAC GTGCTCGGAT TGACCAATCT CTCGGTCGTC GCCGAGGCGC TGGAGTATAT CGCGCAGACG ACCGGCAGAA AAATGGAACT CGCCGATATT CCGCTTGATG ACCCGAAGGT GTTCGAGGCG CTCAGCCGCG GTGAAACAAC GAACGTGTTC CAGCTCGAAA GTCCGGGCAT GACACGCTAT CTGATGCAAC TCAAGCCGAC CCGCGTCGAA GACCTGTACG CGATGGTCGC CCTCTATCGC CCCGGTCCGC TCGAGCAGAT CCCGGTCTAT ATTCATAATA AGAATAACCC GCAGGATATT AAGTACCTCC ATCCCATCCT GAAACCGATC CTCGAAGACA CCTATGGCGT GATCGTCTAC CAGGAACAGA TCATGCGCCT GCTCCAGGAG GTCGCCGACT ATACCCTCGG TCAGGCGTAC ATCGTCATCA AAGCCATCAG CAAAAAAGAC AAAAAGTTGA TGGCGGAGAA CGAGGTGAAG TTCAAACAGG GGTGTCTCCG CAAAGGATTG ACCCAGGAGC AGGCGGATCA GTTGTGGGAC CTGATCCTGC CGTTCGCCGG GTACTCGTTC AATCGACCGC ACTCGACTCT CTACGGTCTG CTCAGTTATC AGACCGCCTG GCTCAAGGTG AACTATCCGG TCGAGTACAT GGCGGCGGTG TTGAAGGGCG CCGGCGGTGT GACGGAAGAT ATTGCCAAGG CGGTCAATGA ATGCCGTCAG CGCGGCGTTC CGGTGCTCGG TCCCGACATT AATGCCAGCG CACTCGATTT CACCATCCGC GAATTTCGCG ATCCGTCCGA TGGTCAGATC CGGCGCGGCA TCCTGTTCGG GCTGGCAGCG ATCAAGAATG TGGGCGCCGG ACCGATCGAG GCGATCCTGC GCGAGCGCGA CGCGAACGGT CCGTTCCGCT CGCTGGACGA TCTGTGCGAA CGGGTGGACC GTCACGCCTT GAACAAACGG GTGCTCGAAA GCCTGATCAA AGCCGGTGCG CTCGACCCGC TCCCCGGCAC GCGCCGGCAG AAGCTGGCGA TCCTCGACAC GGCGCTGGAG GCGGGCGCAC GCGCTCAGAA GAACCGTGAA ACTGGACAGA TTGACATGTT CGGCAATATC GTCGCCGATA CGGACGCCTC GATCAGTGCG ATCCCGCTGC CGACGATCAA CGAGACCCCT GATGATCGGA AAGAGCAACT GGCATGGGAA AAAGAATTGC TTGGCGTCGT CTTTTCAAGC GACCCGCGTA AAGTGGCGCT GGCGGATGCC GCCATCGACA ATCGCGTGCC GCTTGCCGCG CTCCGCGACC CGGAAGGGTT GCAGGAATAT ATGGGCAAGG TGCATACCTT TGCTGGCATG CTGACGCGCG TTCGCGCAAT TTCGACAAAA AAGGGCGACT CAATGCTGGT TGCGGCGCTC GAAGACGAAC ATGAAGATGT TGTCGAACTC GTCGCCTTTC CCAAAGCCTG CGAAAAATAC CGCGATCTGC TCCGTCAGGA CGCGCTGCTC GTTGTGCAGG CAAAAGTCGA TGAGCGTAAT GGCGTCGTGC AACTGGTGCT CGAACAGGCG GCGCACCTCG ACCTGTCAGC AGCTGCGCTG CCGCCAGATG CGCCTGAAAT GGATCTCGAA GGACTGGCGG AGGAGGATGA CGGCGTTGTT CCCCCGGAGA TCGTTCCATA TGCGACAGCG CCAGATGAAA CGGCGCGCCC TGTCGCGCCA TCCGTTCCTG CAACCGCAGC GGCGACACCG CCAGAGTCTC CCTCTGCAGA GGTGGGGTCT ACATCCCCAT CGCCAACTCC GGCTGCGCCG CCGGTAACCA CCCCTATTTC GATCATCAAA CCGCATGCTA CATCCCGCCC ACGACCATCT GCAGCGCCGA ACGGGAACGG GCACGACCAT CATCCGCCGC AGACCAACGG CGGATCTGCG CAGGGACGTA CCATGCGCCT GCGTTTTCGT CGCACCGGCG ATCACGACTC AGACATCCGC CTGATGCAGC ACATCTACGA TCTGCTGCGT GGACGCGACG GCTCGGATCA GGTTGTGATA CAACTGGACA CTGCCGATCG TCGGGTGCTG CTGCGCATGC GTCGGACGAT CACGTGCGAT GAGGGATTGA TCGGCGCGCT GCGCGATACG CTCGGACCGG AGTGCGTTTC GGTGGAATAG
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Protein sequence | MNDFVHLHVH SEYSLLDGYA ATSAIAARAV ELGMDSIALT DHGVMYGVME FYASAKKAGI KPIIGLEAYM APGSRRDATS RGAKNYYHLL LLAKDEVGYR NLVRLTTRAH LDGMGKGVFA RPRIDRELLE QYHDGLIVTS ACIAGEVIQR LTEKQKDQAR EIAAWYRDLL GPDNYFLELQ LHENTPELEE INDELVRIGK ELGIPLVVTN DTHFVRPEDL EAHKMILALG YNMTLKELCA KNYQMDATYH IMSGEEMWRR FKKYGTTPLE NTRRIAERCN LTLEFGRVQL PTIDIPEGHD AASYLRLVCE EGLMRRFNGH PPEEYVKRLA YELDVINQTG FPDYMLIVWD YVKFARARGI PCLPRGSAGA SLILYCLGIT DVDPVKNKLL FERFLSPERL EMPDIDIDFA DSRRHEVLEY IAAKYGRENT AQIITYGTLG AKAALRDIGR VLEIPLNEVD RVARLIPALP VGTTIAQALE RVPELKQIYT TNPDLARLID WAQKVEGRMK SVGTHACGVV VSRTPLEDIV PLQRTTKDEN ALMAAFEGPT LQKMGLLKMD VLGLTNLSVV AEALEYIAQT TGRKMELADI PLDDPKVFEA LSRGETTNVF QLESPGMTRY LMQLKPTRVE DLYAMVALYR PGPLEQIPVY IHNKNNPQDI KYLHPILKPI LEDTYGVIVY QEQIMRLLQE VADYTLGQAY IVIKAISKKD KKLMAENEVK FKQGCLRKGL TQEQADQLWD LILPFAGYSF NRPHSTLYGL LSYQTAWLKV NYPVEYMAAV LKGAGGVTED IAKAVNECRQ RGVPVLGPDI NASALDFTIR EFRDPSDGQI RRGILFGLAA IKNVGAGPIE AILRERDANG PFRSLDDLCE RVDRHALNKR VLESLIKAGA LDPLPGTRRQ KLAILDTALE AGARAQKNRE TGQIDMFGNI VADTDASISA IPLPTINETP DDRKEQLAWE KELLGVVFSS DPRKVALADA AIDNRVPLAA LRDPEGLQEY MGKVHTFAGM LTRVRAISTK KGDSMLVAAL EDEHEDVVEL VAFPKACEKY RDLLRQDALL VVQAKVDERN GVVQLVLEQA AHLDLSAAAL PPDAPEMDLE GLAEEDDGVV PPEIVPYATA PDETARPVAP SVPATAAATP PESPSAEVGS TSPSPTPAAP PVTTPISIIK PHATSRPRPS AAPNGNGHDH HPPQTNGGSA QGRTMRLRFR RTGDHDSDIR LMQHIYDLLR GRDGSDQVVI QLDTADRRVL LRMRRTITCD EGLIGALRDT LGPECVSVE
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