| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0078 |
|---|
| Symbol | lysS |
|---|
| ID | 5207011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 92787 |
|---|
| End bp | 94256 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640593710 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_001274469 |
|---|
| Protein GI | 148654264 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00518607 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.367083 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTCA ACGAACTTCA ACAACAGCGC CTGGCAAAAC TGGAACGCTT GCGCGCAGCC
GGCATCGACC CGTATCCGCC GCGTACCCGG CGCACCCATA CGATTGGCTT CGTGCTTGCC
AGTTTCGACC AGTTGATGGA ACGCGGAGAA CAGGTCACCG TCGCCGGGAG AATTGTGGGC
GCCCGTCGGA TTCTGGGCAA ACTGGCATTT GCCCACATCG AAGACGAGTC GGGCCGCATC
CAGATCTGGC TCAGTCGCGG CGACATCGGC GACGAATGGT TCGACCGGTT TCGCGATGAC
CTCGATACGT TCGACATTGT CGAAGCCACG GGAACGTTGC GCCGCACGCA ACGCGGCGAG
CCTTCGGTGT TCGTCGAGCG CCTGGGGGTG CTGGCAAAAT CGCTCAACCC GCCGCCGGAA
AAGTGGCATG GTCTTTCGGA CATCGAAGAG CGTCATCGTC AACGCTACCT CGACCTGATC
GTCAACCCTG AAGTGCGCGA CGTGTTTCGC ACACGCGCGA AGATCGTCAG CACAATGCGG
CGCTTCCTTG ACGAACGCGG CTTTCTTGAG GTGGAGACGC CAACCCTGCA ACCGATCTAC
GGCGGCGCTT CGGCCCGCCC GTTCATCACG CACCATAACC AGTTGAAGCA GGATCTCTAT
CTGCGCATCG CCGTCGAACT CTACCTGAAG CGCCTGATCG TCGGCGGCTT TGAGCGCGTC
TATGAGATCA GCAAGGTTTT TCGCAACGAA GGGGTTGATC GTACCCACAA CCCTGAGTTC
ACGATGATGG AATGTTACCA GGCGTATGCC GATTACAACG ATATGATGCG CCTGGTCGAA
GACCTGTACC GGACCCTGGC GCTGGAAGTC GCTGGCAGCA CAACCATTGT CTTTCAGGGA
CACACTATCG ATTTCGGTCC TGCGTGGCAG CGTGTTTCGA TCCCGACGGC GATTGCCGCG
CGCACCGGCA TCGACATTCT CGAACTCACC GAACTCGAAC CGTTGCAACG AGCGATCCGC
GCAGTCGGGC TGAAGGTCGA TCTCAAACCC AGTTGGGGCA AACAGGTTGA CGAGATCTTT
AGCGTTTATG TGCAACCAGA ATTGATCCAG CCAACGTTCG TTATCGATCA TCCGGTGGCG
CTGTCGCCGC TGGCGAAACG TCGTCCCGAT CAACCGCTGC TGGTGGAACG CTTCGAGCCA
ATCGTGGCTG GCATGGAAGT CGGCAATGCG TTTACCGAAT TGAACGATCC GCTCGACCAG
GAGCAGCGTT TTCTGGAACA GGGGCGCGCG TATGATGCTG GCGACGATGA AGCGCAACAG
ATGGACATTG ACTTCCTCAA TGCGCTGATG TATGGTATGC CGCCAACCGG CGGGTTAGGC
ATCGGTATCG ACCGGACGGT GATGCTGTTC ACCGATCAAC CGAGCATCCG CGAAGTCATC
CTGTTCCCGC ACATGCGTCC GCGTGATTGA
|
|---|
| Protein sequence | MELNELQQQR LAKLERLRAA GIDPYPPRTR RTHTIGFVLA SFDQLMERGE QVTVAGRIVG
ARRILGKLAF AHIEDESGRI QIWLSRGDIG DEWFDRFRDD LDTFDIVEAT GTLRRTQRGE
PSVFVERLGV LAKSLNPPPE KWHGLSDIEE RHRQRYLDLI VNPEVRDVFR TRAKIVSTMR
RFLDERGFLE VETPTLQPIY GGASARPFIT HHNQLKQDLY LRIAVELYLK RLIVGGFERV
YEISKVFRNE GVDRTHNPEF TMMECYQAYA DYNDMMRLVE DLYRTLALEV AGSTTIVFQG
HTIDFGPAWQ RVSIPTAIAA RTGIDILELT ELEPLQRAIR AVGLKVDLKP SWGKQVDEIF
SVYVQPELIQ PTFVIDHPVA LSPLAKRRPD QPLLVERFEP IVAGMEVGNA FTELNDPLDQ
EQRFLEQGRA YDAGDDEAQQ MDIDFLNALM YGMPPTGGLG IGIDRTVMLF TDQPSIREVI
LFPHMRPRD
|
|---|
| |