| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_6196 |
|---|
| Symbol | |
|---|
| ID | 4036634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007972 |
|---|
| Strand | - |
|---|
| Start bp | 46523 |
|---|
| End bp | 47764 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637975222 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_582005 |
|---|
| Protein GI | 94152603 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 59 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000226919 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCAC GCGCAACCTT CCGTACGAAA CTCGCCAGTC TTGTGCTTCC GCCTGGAATC
GACGCAAGCG TGAAGCCGCT TCTCGTCGGC CGTGCGTTGC GTGGATTGTG CGACGGGTAT
GTCGCGGTAC TCCTGCCAGC GTATCTGCTG GGGCTTGGCT TCGGCCAGTT TTCTGTCGGA
CTGATCAGCA GCGTGACGCT GATTGGCTCC GCGCTCGGAA CCATTCTCGT CGGACTCGTT
GGGAGCCGCT TTTCACAACG CCGTCTGCTG ATGCTTGCTG CGGTGCTGAT GGCGGCTACA
GGGCTGGGCT TTGCAGTCCT GACATCACTG TGGCCACTGT TGATCGTAGC CTTTGTCGGT
ACGCTGAACC CGAGCTCGGG CGATGTCAGC GTGTTCCTGC CGCTGGAGCA AGCCCGTCTT
GCAGACGCCG CGACACCTGA GGCCCGGACG GCGCTGTTCG CTCGGTACAG CCTTGTGGGG
GCATTCTCCG CCGCCATCGG CGCCTTGGCT GCTGCCCTGC CGGCATGGAT CTCCGCTCAT
GCCGATGTGT CGTTTCTGGC GGCAATGCGG TGGATGTTTG TCATTTACGC CTTGACCGGC
ATCGCGTTAT GGGCGCTCTA TACCCGCCTT CCCAAACCTC ATCCGCAGTC GACCGCACCA
ACTACCCCCC TGGGCCCATC TCGTCACATC GTTATCCGGC TGGCGATGCT ATTCAGCATC
GATGCGTTTG CTGGCGGCCT GGTAGTGAAT GCCCTGTTGT CGCTTTGGCT GATGCAGCGT
TTCGGGATGT CCCCGGGAGC AGCGGGTCAG TTCTTTTTCT GGGCGGGATT GCTGACAACG
GCCTCCCAGC TCGCGGCGGT GCCGTTGGCG CGCAAGATCG GGTTGCTGAA CACCATGGTG
TTCACTCACA TCCCTTCGAG CGCCTTTCTG ATTGCTGCCG CCTTCGCGCC ATCGTTGGCA
TTGACTTTGC TGCTGTTGCT TGCGCGCAGT GCGCTGTCGC AAATGGACGT GCCGACTAGA
ACGGCGTTCG TGATGGCTGT GGTGACTCCC GCTGAGCGTA CGGCGGCGGC AAGCCTGACT
GCTGTTCCGA GGAGCCTGGC CGCTGCGGTC AGCCCGGTAC TTGCAGGAGG GCTAATGGCC
ATGGGCTGGA TTGGCGCACC GCCGTTGGCC TGCGGTGTGC TGAAAATCGG CTATGACCTC
GCCATTCTGA CCGCCTTCAG ACGGATCAAA CCGCTCAACT GA
|
|---|
| Protein sequence | MSARATFRTK LASLVLPPGI DASVKPLLVG RALRGLCDGY VAVLLPAYLL GLGFGQFSVG
LISSVTLIGS ALGTILVGLV GSRFSQRRLL MLAAVLMAAT GLGFAVLTSL WPLLIVAFVG
TLNPSSGDVS VFLPLEQARL ADAATPEART ALFARYSLVG AFSAAIGALA AALPAWISAH
ADVSFLAAMR WMFVIYALTG IALWALYTRL PKPHPQSTAP TTPLGPSRHI VIRLAMLFSI
DAFAGGLVVN ALLSLWLMQR FGMSPGAAGQ FFFWAGLLTT ASQLAAVPLA RKIGLLNTMV
FTHIPSSAFL IAAAFAPSLA LTLLLLLARS ALSQMDVPTR TAFVMAVVTP AERTAAASLT
AVPRSLAAAV SPVLAGGLMA MGWIGAPPLA CGVLKIGYDL AILTAFRRIK PLN
|
|---|
| |