Gene Rmet_6140 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_6140 
Symbol 
ID4036479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007971 
Strand
Start bp158327 
End bp160444 
Gene Length2118 bp 
Protein Length705 aa 
Translation table11 
GC content60% 
IMG OID 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_581949 
Protein GI94152542 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.0593107 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACACAT TGCTTGTTTC GGAGTGCCTC GACCTGACGG CACGCCGCGT TGCGCTCGAC 
CAGCGATATC GGGATCTGGT CGGGGTCAAT CAGACATCGA CGAACGTCTT CTCGGTCTTC
GATGACGACG GCACGTTTCT CGGTGTCGTG ACGGACCGGC AGGCGACGCT TTTTCCAGCA
CGGATTTTCG CGGATCTGAT CGCACGACGT CCACCCGAGC CCGTGCAGGG GCATGCCAGC
GCGATCCAGT TGCTCAAGCG CATGCGTAAG GAAGCTTGTG AGCACCTACC CGTCTTCGAT
GCGCAAGGGC GATACATCGG CATTGTCTCC ATGGCGTCCT TGCTGGCCGA GTTCGTTTGT
CGCAGTGACA TCAATCGTCG TGAACGCGAG GCGCTGGTTA GCCAATTGCG TACTGAGCTG
GAAAACCGCA AGATATCGGC CAATGTGCTC GAGTCAACTA GTGACGCGGT GCTGGTAACG
GACGCTCGCT TGCGCATCCA GTACATCAAT CGTGCCTTCA CAGCCGCGAC GGGCTATCCC
GGCGCGGATA TTGTCGGGCG GCCGGCCGGA TTCTTACGGT CTGGCCGGCA TGGACGGGGC
TTCTACGCGG AGATATTTGC AACCCTGCGC GATGGCGGAC GCTGGGAAGG GGAGGTCTGG
CTATTGCGGG CGGACGGCTC GATCGCGCCC GACTGGGTAA CGATCAAGAC GGTTCACGAC
GAGCATGGCG AAGTGTTCAG TTTCGTGGCG ATGTTCGCGG ACATCATGCA GCGCGAAAGC
CTGCGCGCCC AGTACATGCA CCTTGCCTAC TACGACAGCC TGACCGGTCT GCCAAATCGA
CGCTTGTTCC AGGACCGGCT TGGCCATGCG ATCGAACGTT CGGCGAACAA GGGTACGGAA
TTTTCCCTGC TTTTCCTTGA CCTCAACCGG TTCAAGGACG TGAACGATAC ACTGGGCCAC
TCGTTTGGCG ATCGGCTACT CGAGGTGGTC GGGGAGCGCT TCAAGCGACT GGTGAAGGAA
GCGGATTTTG TCGGCCGTAT CGGCGGCGAT GAATTCACAT TCATTCTGCA CGACACCGCG
GATCCTGCTC AGGTCGAGTC GATCGCGCGG CGGATCTTCG ATGAACTGGC CAAGCCGATT
GTCCTGAACG GTACGCAAAG CTACGTCTCC GCGAGCATTG GGGTCAGCCG ATTTCCCGCC
GATGGCACGA CCGCAGAAGC GCTGATCATG AATGCCGATG CGGCGATGTA CCGCGCCAAG
GAGGATGGCA TCGGCGCTTG TCATTTTTTT TCTCGCGGCC TGCATACGAA GGTGCTCAAG
CGCCTCGACA TCTCCAACGC GCTGCACCGC GCGCTCGAGG CCAACGAATT TTCGCTGGCC
TGGCAACCCC AGGTGTCGCT CACCACGGGC AAGGTCATCG GTGCGGAAGT CTTGCTCCGC
TGGATGCGAG ATGGCAGCGT TCCCGTCTCG CCGGCCGAAT TCATTCCGGT AGCCGAAGAG
ACCGGGGTAA TCGGCGCGAT CGGGGATTGG GTATTGCGCG AATCCTGTCG ATACGTCGCG
AAGCTCGAGG CACTGGCGAT CGATCCGGAA TTCAGGGTGG CGGTGAACTT CTCGCCCTTG
CAACTGAGTT GGCACAGGCA GGAGCCTGTG CTGCAGACTA TCGCGCAGTT TGGCGTTGAT
TGTCGGCGCT TCAAGATTGA GCTGACGGAG AACGCGTTGT TCGTGCACGA GGAAGGGCTG
CTAGAATTTG TGCGGGAGCT GGGCGCCGCG GGCGTCGGAA TTGCCATCGA CGATTTCGGG
ACTGGATACA GCAATCTGTC CAGTCTGAAG CACTTACCGG TCACCGAACT CAAGATTGAT
CGCGCCTTTA TCCATGACAT GCAAGGCTCG CACAGCGACA GGCAAATCGT GCAGGCCATG
ATTAGCATGG CGCATATGCT TGGGCTGCGC GTCGTGGCCG AAGGGGTCGA GTACGTTTGG
CAAGTGTCGG TGTTGCGGGA GTTTGGCTGC GAGGTGGGGC AAGGCTACCT GTTCAGCCGG
CCGATCGACT TTGACGCGCT GGTCAAGCTA CTCGATGCGC CCGCCGTCGA CGTACAGGCG
ATGCTTGCCG ACGGCTAG
 
Protein sequence
MDTLLVSECL DLTARRVALD QRYRDLVGVN QTSTNVFSVF DDDGTFLGVV TDRQATLFPA 
RIFADLIARR PPEPVQGHAS AIQLLKRMRK EACEHLPVFD AQGRYIGIVS MASLLAEFVC
RSDINRRERE ALVSQLRTEL ENRKISANVL ESTSDAVLVT DARLRIQYIN RAFTAATGYP
GADIVGRPAG FLRSGRHGRG FYAEIFATLR DGGRWEGEVW LLRADGSIAP DWVTIKTVHD
EHGEVFSFVA MFADIMQRES LRAQYMHLAY YDSLTGLPNR RLFQDRLGHA IERSANKGTE
FSLLFLDLNR FKDVNDTLGH SFGDRLLEVV GERFKRLVKE ADFVGRIGGD EFTFILHDTA
DPAQVESIAR RIFDELAKPI VLNGTQSYVS ASIGVSRFPA DGTTAEALIM NADAAMYRAK
EDGIGACHFF SRGLHTKVLK RLDISNALHR ALEANEFSLA WQPQVSLTTG KVIGAEVLLR
WMRDGSVPVS PAEFIPVAEE TGVIGAIGDW VLRESCRYVA KLEALAIDPE FRVAVNFSPL
QLSWHRQEPV LQTIAQFGVD CRRFKIELTE NALFVHEEGL LEFVRELGAA GVGIAIDDFG
TGYSNLSSLK HLPVTELKID RAFIHDMQGS HSDRQIVQAM ISMAHMLGLR VVAEGVEYVW
QVSVLREFGC EVGQGYLFSR PIDFDALVKL LDAPAVDVQA MLADG