| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5677 |
|---|
| Symbol | nimC |
|---|
| ID | 4042541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 2434742 |
|---|
| End bp | 2436001 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637981096 |
|---|
| Product | heavy metal cation tricomponent efflux outer membrane porin NimC |
|---|
| Protein accession | YP_587805 |
|---|
| Protein GI | 94314596 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 47 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCAG CAATGCGAAA CATCGTGTTG GCGATGATAG GAGCCGCGTT GCTCTCGAAT
GGTGCCGTCT TCGCGCAGGA CGCGCAGTCG TACCTGCCTG CCGAGGTGGC AGTGCGCGAG
GCCGTTGCGC GGGCGCCTGA CGTGCTTACG GCTGAAGCGC GGCGGGATGC CACGACGGCA
CGCGCCGCAG GCACGCGAGC GGGCACGGCG GAAACGGTTG TCCGGGTGAT CGGCCAGGGC
CGGCAGGTGC GCGAGCCCTC CGAGCGCTAT CCCGAAGGCC AGATTGCAAT CGAGCGTCCG
CTGCGTCTCT GGGGCAAGGC GGAGGCCGAC GGCGTGCTGG CCGATCTCGC GACCGAGGCC
GGCAACCTCT CGGTCAAGGA CGCCAAGCAC GAAACATCGC GTCAGATCCT GAGTCTCTGG
ATCGCAGCGA TTCGCGCGGG GCAGGCCCGC ATGGCCGCCG AGGACAATGC GCGCGCGGCG
GCGGACCTCG CAGCCATGAC GACGCGGCGC GTGCAGGTGG GTGATGCCGC GCGTCTCGAC
GCGGAGCTGG CAGCGGCGGA ACTGGCGCGC ACGCGCGCGA CGGTGGCCAC TGCCCAAGCC
ACTGAGTCGG CATCGCTCGC CGAGTTGCGC GCGCGTTTCC CGATGCTGGG TCAACCGGTG
CAGGCGCCCG TTCGCATCGC GCTGCCGCCG CCTCCGCAGG AGCCGGTCGA GCAGTTGCGC
GGCATCTACG TGCAGGACAG CCATGAATAC CTGCTGGCGA TGGCGGAAGA AGCCCATGCG
TTGCAGCAGG CCAAACGATC GGATCTGGAC CGCAAGCCGG ACCCGACCGT CGGCATGTTC
GTCACGGTGG AACGCGGCGG CGCCGAGCGG ATTCTCGGGG TCAGCGTGTC GATGCCGCTT
GGCTCGGCGT ATCGCCGCTC TAACGCAGTG GCGGCAGCGG CAGATGCCGA GGCGGCCGCG
CGGAAGCGGC TGGGCATCGA ACAACGTTTG GGTGCGGAGT TCGATGTCTT GTACCGGAAC
CTGTCCGGCA AGCGCGCGGC GGCAGCGGCG CAGACCGAGG CCGCGACGCT GCAACGGACG
GCGTCGGATC GCGCAACGCG CGCGTATCGG GCCGGAGAAT CTGGCTTGCA GGAGCTGATC
GTCGTGCGTC GAAACCTGGC CGACGCCATG CTGGCGGAGC GCCTGGCCAA TGTCGACGTG
CTCGAGTCGG ATAGCCGTCT GAAGCTCGAT CTCCATCGCA TGTGGGACTT TGACGACTGA
|
|---|
| Protein sequence | MKPAMRNIVL AMIGAALLSN GAVFAQDAQS YLPAEVAVRE AVARAPDVLT AEARRDATTA
RAAGTRAGTA ETVVRVIGQG RQVREPSERY PEGQIAIERP LRLWGKAEAD GVLADLATEA
GNLSVKDAKH ETSRQILSLW IAAIRAGQAR MAAEDNARAA ADLAAMTTRR VQVGDAARLD
AELAAAELAR TRATVATAQA TESASLAELR ARFPMLGQPV QAPVRIALPP PPQEPVEQLR
GIYVQDSHEY LLAMAEEAHA LQQAKRSDLD RKPDPTVGMF VTVERGGAER ILGVSVSMPL
GSAYRRSNAV AAAADAEAAA RKRLGIEQRL GAEFDVLYRN LSGKRAAAAA QTEAATLQRT
ASDRATRAYR AGESGLQELI VVRRNLADAM LAERLANVDV LESDSRLKLD LHRMWDFDD
|
|---|
| |