| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4959 |
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| Symbol | fimD |
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| ID | 4041821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 1626156 |
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| End bp | 1628759 |
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| Gene Length | 2604 bp |
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| Protein Length | 867 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637980380 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_587090 |
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| Protein GI | 94313881 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.45862 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCGG TATCAAGAAT CCCTCATTCG ATCCCAAGTC GCCTGTGTCA GGTGAGCGCA
GTCGTGCTCT CGATGTTCGC GGGGGCGGTA GTCACGCCCG CCATGGCCAC TTCCACGGAC
GCGCCGGTGG GCGTGACGAT AGCCGCCGTG GAATTTAACG ATACCTTTCT TCATAGCCCG
GACGGGATGC GGCTGGATAT CTCCCGATTC AATCAGGGCA ACTTCGCGAC CCCAGGCAGC
TACCGTGCCG ACCTGTATGT CAATGATGCC TGGCTGGGCC GCGCCGAAGT CAACCTTCGC
GCGATTGGGG ATGACGCGCA CAACGTGCAG CCTTGCTTCG ATCACGACAT GCTCGAACGT
ATGGGCGTCG ATCTCGCCAA GCTGCCGCCA GAGGCAATCG CGCGGCTCCA GGATGGGTCT
GGCTGCGAAC AGATTCCCGC GCTGATCCCC GCGGCCACCG CGACGTTCGA TACTGGAGAG
CAACGTCTTG ACGTGAGCAT CCCGCAGCTC TATATGAGGC GTTCTGCGCG CGGTTATGTC
GACCCGAAAT ACTGGGATAA CGGTATTCCC GCCGCGCGGT TGCAGTACAA CGCCAATGCC
TACCATTCGG ATAGCGCCGG GGTCTCGTAC ACGCAGGGCT TCGTGGGGCT CGACGCAGGT
TTGAACCTGG GACCATGGAG GTTCCACCAC AACGGCAATC TGTCGTATAG CAGTGGCGGA
GGGCAGCCGG GCGCCACGCA CTACCAGGCG GTGCAGACCA ACCTGCAACG GTCGATTAAT
GAGATCAAGA GCCAGCTCAC GCTGGGCGAT GCCTTCACCG ATGGCCGGAT GTTCGACAGT
TTCGGCTTTC GCGGTGTCCA GCTGGCGACC GATGACCGCA TGTATCCGGA CTCGCAACGC
GGATACGCGC CGACGATCCA TGGCATCGCC AACAGCAACG CGCGGGTACA GATTCGCCAG
AACGGCAACA TCATTTACGA AACCACGGTC GCCCCGGGCG CGTTCGAGAT CAACGATCTG
TATCCAACCG GCTACGGCGG CGACATCGAC GTGGTGGTGA CCGAAGCCGA TGGGTCGCAG
CATGTCTCCC GCGTGCCGTT CGCGCCGATG GCCAATGCGC TGCGCCCGGG CGTAACGCGC
TATGGCGTGA CGGCCGGTCA GTTCCGCAAT ACCAGCATCT CAAGCAAGCC CGGCGTGTTC
CAGGCCACGA TCCAACACGG CCTGTCGAAC ATGTTCACCG CCTACGGTGG CGCGCTGGTG
TCCGAGGGCT ACTGGTCCGC GCTGGCGGGT CTGGCCATGA GCACGGACTT TGGCGCGATC
GGCCTCGATG TCACGCAAGC GTCGACACAC CTGACTTCGG AGCCGGATCG TAGCGGGCAA
AGCATCCGGC TGTCGTACAG CAAGCTGGTT GCCCCGACCA ATACCAACCT GACGCTGGCG
GCCTATCGTT ACTCGACGCG CGGCTATCTG GGCTTTTCCG ACGCGGTGAT ACTGCGCGAT
CTCGATTCGC GCGGACTCGG CTTTTCCGCG GTGGGCACGG TGCGTGGCCG GTTGCAGGTG
ATGCTCAATC AGATGCTTTC GGCGGGATAC GGCAGCTTCT ATCTGTCGGG ATCGACCCAG
GACTACTGGA ACCGGGATGG CCGGGACACG CAGTTCCAGG CCGGTTACAG CAATATCTAC
AGGGGTGTCA GCTACGGGAT TTCGGCGGCC AGGCAGCTCA GCCTCAATAC CGGCAAGTGG
GACAACCGCG TGATGCTGAC GCTGACGCTG CCGCTCGGCA AGTCACCGTT CGCGCCGTAC
TCGACGACCA GCCTCCAGAA GGACTCGCAG GGGGCAACTA CCTTGCAGGA GACCCTTTCC
GGGACGCTCG GCGCCGATCA TGCGCTGTCG TACTCGGTCT CCGCCAATCA TGCCAGCGGT
GGCGACGCGC CTACCAACAA CAGCGCCAGC CTCAATGCCT CCTACATATC GAGGATGGCG
ACGCTATCGG GCAACGTGAG TAAGGGCACG AACTACACGC AGGCGGGCGT GGGCATCTCA
GGCGGTGTGG TGGCTTACCA GGGCGGTGTC ACGTTCGCCC CGCGCTTCGG CGATACCGTC
GCGGTCATCG AGGCCAAGGA TGCGGTGGGC GCGCAGGTGC TCAACGATAC GGGCCTGCGT
ATCGATCGAT GGGGGCACGC GGTGGTCTCG AATCTGACCC CGTTCTCTCG CAACGAGATC
AACCTCGATC CGAAGGGATT ACCGCTGAAC GTCGAACTGA AGTCGACCAT GCAGAACGTT
GCCCCGACAG CCGGCGCCGT GGTGAAGGTG CTGTTCGAAA CCGATAACCC GGGTCGTGCC
GTGGCGCTGC GCATCAAGCT ACCAGACGGC AGCCCGTTGC CGTTCGGTGC GGAAGTGCTG
GACGACAATG GCCGGTCCTT CGGCACGGTG GCCCAGGGTG GATTGGCGAT CCTACGTGGC
GTGAAGGACG ACAGCGGAAC GTTGCTGGCC AAGTGGGGCG CGGGCCCGAA GGATTCGTGC
TCGCTGTCCT ATGCATTGCC CGGCGTCGAC GCGGCTCCTG CCGGGTTGGT ACAGGCGGGT
GCGGAGTGCC GGCCGAACCC GTGA
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| Protein sequence | MKPVSRIPHS IPSRLCQVSA VVLSMFAGAV VTPAMATSTD APVGVTIAAV EFNDTFLHSP
DGMRLDISRF NQGNFATPGS YRADLYVNDA WLGRAEVNLR AIGDDAHNVQ PCFDHDMLER
MGVDLAKLPP EAIARLQDGS GCEQIPALIP AATATFDTGE QRLDVSIPQL YMRRSARGYV
DPKYWDNGIP AARLQYNANA YHSDSAGVSY TQGFVGLDAG LNLGPWRFHH NGNLSYSSGG
GQPGATHYQA VQTNLQRSIN EIKSQLTLGD AFTDGRMFDS FGFRGVQLAT DDRMYPDSQR
GYAPTIHGIA NSNARVQIRQ NGNIIYETTV APGAFEINDL YPTGYGGDID VVVTEADGSQ
HVSRVPFAPM ANALRPGVTR YGVTAGQFRN TSISSKPGVF QATIQHGLSN MFTAYGGALV
SEGYWSALAG LAMSTDFGAI GLDVTQASTH LTSEPDRSGQ SIRLSYSKLV APTNTNLTLA
AYRYSTRGYL GFSDAVILRD LDSRGLGFSA VGTVRGRLQV MLNQMLSAGY GSFYLSGSTQ
DYWNRDGRDT QFQAGYSNIY RGVSYGISAA RQLSLNTGKW DNRVMLTLTL PLGKSPFAPY
STTSLQKDSQ GATTLQETLS GTLGADHALS YSVSANHASG GDAPTNNSAS LNASYISRMA
TLSGNVSKGT NYTQAGVGIS GGVVAYQGGV TFAPRFGDTV AVIEAKDAVG AQVLNDTGLR
IDRWGHAVVS NLTPFSRNEI NLDPKGLPLN VELKSTMQNV APTAGAVVKV LFETDNPGRA
VALRIKLPDG SPLPFGAEVL DDNGRSFGTV AQGGLAILRG VKDDSGTLLA KWGAGPKDSC
SLSYALPGVD AAPAGLVQAG AECRPNP
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