| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4928 |
|---|
| Symbol | lysP2 |
|---|
| ID | 4041790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 1590919 |
|---|
| End bp | 1592451 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637980349 |
|---|
| Product | lysine-specific permease |
|---|
| Protein accession | YP_587059 |
|---|
| Protein GI | 94313850 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0833] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.382341 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.631803 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAATA CCAATACAAC ACCAGCCGTC CCCGTTCCCG GCCTGCGCCG CGAACTGCGC
GCGCGCCATC TGACCATGAT CGCCATCGGC GGGTCGATTG GCACCGGACT CTTCGTCGCC
TCAGGCGCCA CGATCGCCCA GGCCGGCCCC GGCGGCGCGC TGGCCGCCTA CATCCTGATC
GGCGCGATGG TCTACTTCCT GATGACCAGC CTGGGCGAAC TGGCCGCGTA CATGCCCGTG
TCCGGGTCCT TTGCCACCTA TGGCGCGCTG TACGTCGACG AGGGCTTCGG TTTCGCGCTT
GGCTGGAACT ACTGGTACAA CTGGGCCGTC ACGATCGCCG TGGAGCTGGC CGCGGCGCAG
CTCGTCATGC AGTACTGGTT CCCCGACACG CCAGGCGTGC TATGGAGCGC CCTGTTCCTT
GGCCTCATGT TCGCGCTCAA CGCGATCTCC GTGCGCGGTT TCGGCGAAGC GGAATACTGG
TGCGCGCTGA TCAAGGTCCT CACGGTGATC GCCTTCATCG TCATCGGTAC CTTGATGATC
TTCGGCATCA TGCGCGGTGA TTTCTCCCAC GCAGGCGGAC TGGCCAACCT CACCACCGGC
GATGCGCCGT TCGTCGGCGG CCTGCCCGCC ATGATCGGGG TGGCGATGAT CGCGGGCTTC
TCGTTCCAGG GCACCGAACT GATCGGCGTG GCCGCCGGGG AATCCGACGA GCCGGCCAAG
AACATCCCGC GCGCGGTGCG TCAGGTGTTC TGGCGCATCC TGCTGTTCTA CGTGCTGGCG
ATCCTGATCA TCGGCATCCT GATTCCGTAC ACCGACCCCA GCCTGCTCAA GACCGACGTG
GAAACCGTAG GCGTAAGCCC GTTCACGCTG GTGTTCCGCC ATGCGGGTCT TGCGTTTGCC
GCGGGCGTGA TGAACGCCGT GATCCTGACT GCCGTGCTCT CGGCCGGCAA TTCCGGCATG
TACGCGTCCA CGCGGATGCT CTACAACCTG GCCACCGAGG GCCGCGCGCC GCGTATCTTC
GCGCAACTCA CCCGCAACGG CGTGCCCCTG GTCGCGCTGC TGGCCACCAC CGCCGTCGGC
GGCCTGTGCT TCCTGACGTC GCTGTTCGAA AGCAAGTCGG TCTACCTGTG GCTGCTGAAC
CTGTCGGGCA TGACCGGCTT CATTGCGTGG CTGGGCATCG CGGTGAGCCA CTACCGGTTT
CGCCGGGGCT TCATGGCGCA GAGCCTCGAC CTGAACCGCC TGCCCTATCG CTCACCGTTC
TTTCCTTACG GGCCGATCTT CGCGTTCGTG CTGTGCATGA TCGTCACACT CGGCCAGAAC
TACCAGGCCT TCAGCGAAGG CAAGATCGAC TGGGTGGCCG TGACGGCCAC CTATGTGGGC
ATTCCGATCT TCCTGCTGAT CTGGCTCGGC TACCGGCTCG TGCGCAAGTC GCGCTTCGTG
CCGTATGCCG AAATGAAATT CCCGGCCCTG CCTGAGATCG AAAAGGACGA TTCACCCGTG
ACGCGGCCTC TGGCCCCGGC ATCGGCCGAA TAG
|
|---|
| Protein sequence | MSNTNTTPAV PVPGLRRELR ARHLTMIAIG GSIGTGLFVA SGATIAQAGP GGALAAYILI
GAMVYFLMTS LGELAAYMPV SGSFATYGAL YVDEGFGFAL GWNYWYNWAV TIAVELAAAQ
LVMQYWFPDT PGVLWSALFL GLMFALNAIS VRGFGEAEYW CALIKVLTVI AFIVIGTLMI
FGIMRGDFSH AGGLANLTTG DAPFVGGLPA MIGVAMIAGF SFQGTELIGV AAGESDEPAK
NIPRAVRQVF WRILLFYVLA ILIIGILIPY TDPSLLKTDV ETVGVSPFTL VFRHAGLAFA
AGVMNAVILT AVLSAGNSGM YASTRMLYNL ATEGRAPRIF AQLTRNGVPL VALLATTAVG
GLCFLTSLFE SKSVYLWLLN LSGMTGFIAW LGIAVSHYRF RRGFMAQSLD LNRLPYRSPF
FPYGPIFAFV LCMIVTLGQN YQAFSEGKID WVAVTATYVG IPIFLLIWLG YRLVRKSRFV
PYAEMKFPAL PEIEKDDSPV TRPLAPASAE
|
|---|
| |