| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4894 |
|---|
| Symbol | |
|---|
| ID | 4041756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1557194 |
|---|
| End bp | 1558960 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637980315 |
|---|
| Product | cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
|---|
| Protein accession | YP_587025 |
|---|
| Protein GI | 94313816 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0492] Thioredoxin reductase
[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0608959 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGATGA CGCGGGCGAC ATCGGAGACC GATGCCAATC CTGATACCTC GGGTGGCGAC
GGTGGTCACG AGCCGGTTTC CGGGCTGGAG GCGCCGTATT CGCTACTGGA ATCCCGCAGC
CACCAGATGT TTCCAACGCT GACGGCGGCC GAAATCGAGC GCATTCACCG TTTCGGCGAA
GTTAGATCGT GGCGCGCTGG CGAGATGCTT TTCTCGACGG GCGACGTGGG GCGCGGGATG
TACGTCGTCC TGTCCGGCCA CACGCGCATC ATCCAGCGGG ACGGGCTGGG CAACCGCAGC
ACCATTACCG AGGAAGGGCC CGGCCAGTTT CTGGCGGAAG TCGGGCAACT GACCGGCAAG
CCGGCGCTGG TGGACGCCCT GGCCATCGAG GATACCGTCG CACTGGTGAT TGCCCCCGAG
CGCCTGCGTG CGCTGCTGGT GGCAGAGGCC GATTTGGGCG AGCGCATCAT GCGGGCGTTG
ATTCTGCGCC GGGTCGGCCT GATCGAGCGC GGCAGTGGCC CGGTCCTGGT GGGACGTGGC
ACGCAGCCCT TGTTGCTGGC GCTGCAGGCG TTCCTGCGTC GCAACGGGCA CCCGCACAAG
GTGATCGATA TCGAGACGGA TCACGACTCC ACCTGTCTAC TCGATCTCAG CAATGCCCCG
CAAAGCGATT TCCCGATGGT GATCTGCCCG GATGGCAGCA TCCTGCGCGC GCCGGATGAG
GGCCAGCTTG CCAGTTGCCT TGGCCTGGTT CCCGAGTTCG ACCCCGAGCA TGTCTATGAC
GTGATCGTCG TCGGCGCTGG TCCGGCGGGT CTGGCTACGG CTGTCTATGC GGCGTCCGAA
GGGTTGTCCG TGGCCGTGAT CGATTGCCGC TCGCCGGGCG GGCAAGCTGG CGCGAGCGCC
CGGATCGAGA ACTACCTGGG TTTTCCCACC GGCATTTCCG GGCAGGCGCT GGCGGGGCGG
GCCTTCGTCC AGGCGCTCAA GTTCGGTGCG CATCTGGCGA TTCCACTGGA AGCAAAGGCG
TTGCATTGTG GTGAGAATCC GATCCGGATC GAACTGTCGG ACGGTCGTCA GATTCCCACG
CGTACCGTTG TGATCGCCAC CGGCGCGCAG TACCGTCGCG CGGAGATCGA CTCGCTCGAT
CGCTATGAAG GCCGTGGCGT CTACTACTGG GCTTCGCCGG TAGAAGCCAA GCTGTGCAAG
GACGAACACG CGATGCTCGT CGGCGGCGGT AACTCGGCCG GCCAGGCAGC GGTGTTCCTG
GCGTCCCACG CTAGGGAGGT GCACATCCTC GTGCGCGGCG AAGGGCTAGA GGCAACGATG
TCGCGCTACC TGATCGACCG CATCCGCAGC CTCCCCAACG TCACGTTGCA CACGCACGCC
CAGATCACCG CGCTGGAGGG CGAGGAGTGG CTGTCGATCG TGCGCTATCG GGAGCAAACA
CAGGGTGCCG ACTGCATTTC TGTGCCGATG CGCCACGTAT TCCTGTTCAT CGGCGCGGCG
CCCAACACCG AATGGTTGCG CGCCTGCAAT GTGGAGACCG ATGCCAAGGG TTTCGTGCTG
ACCGGATACG AGGCCCATCG CTCCTGCACC GAACGCGCCG ACTTCACGCT TGAGACGAGC
GTGCCGGGCG TGTTCGCGAT CGGAGACGTG CGATCCGGCT CGACCAAGCG CGTGGCCGCC
GCCGTGGGTG AGGGCGCGGC GGTCGTTGCG CAGATCCACC GGTATCTGGC GGACCTGCAA
CCCGTCGCCT TGGCGGTTCG CATGTGA
|
|---|
| Protein sequence | MEMTRATSET DANPDTSGGD GGHEPVSGLE APYSLLESRS HQMFPTLTAA EIERIHRFGE
VRSWRAGEML FSTGDVGRGM YVVLSGHTRI IQRDGLGNRS TITEEGPGQF LAEVGQLTGK
PALVDALAIE DTVALVIAPE RLRALLVAEA DLGERIMRAL ILRRVGLIER GSGPVLVGRG
TQPLLLALQA FLRRNGHPHK VIDIETDHDS TCLLDLSNAP QSDFPMVICP DGSILRAPDE
GQLASCLGLV PEFDPEHVYD VIVVGAGPAG LATAVYAASE GLSVAVIDCR SPGGQAGASA
RIENYLGFPT GISGQALAGR AFVQALKFGA HLAIPLEAKA LHCGENPIRI ELSDGRQIPT
RTVVIATGAQ YRRAEIDSLD RYEGRGVYYW ASPVEAKLCK DEHAMLVGGG NSAGQAAVFL
ASHAREVHIL VRGEGLEATM SRYLIDRIRS LPNVTLHTHA QITALEGEEW LSIVRYREQT
QGADCISVPM RHVFLFIGAA PNTEWLRACN VETDAKGFVL TGYEAHRSCT ERADFTLETS
VPGVFAIGDV RSGSTKRVAA AVGEGAAVVA QIHRYLADLQ PVALAVRM
|
|---|
| |