Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_4693 |
Symbol | |
ID | 4041554 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007974 |
Strand | + |
Start bp | 1329072 |
End bp | 1329719 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637980114 |
Product | putative lytic transglycosylase, catalytic |
Protein accession | YP_586824 |
Protein GI | 94313615 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.000077507 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.120796 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACTGGG AGGGGACGCC AATGACTGAG CGCAAGCCAT CAACGTTGCC GAGGACCATC CTTTTCACGG TCGTGGTGAT CGTGGGGCTT GCCTTTGCGC GCGTGGCACG GGCCCAGATC TTCGGCGCGG TCAGTGCGGA CGGGTCCATC ACGCTGACCA ATACGGCGGG AAATCCACAT CTGCACCTGC TGGTCGCCGG CAATCCACCG GCCGAGCGCA AGCCCCGGGA GCCGAGGGAT CTGCCCACCG ACGCCGCGCT GTTCGCGACT TTCATTTCGG AAGCCAGCCG CAACTCCCAC CTGCCGCCGG AACTGATCCG TGCCGTGATT GCCATCGAAT CGCGCTTCAA TCCCAATGCG GTATCCAGAA AGGGCGCGAT CGGACTGATG CAACTGATGC CGGATACCGC CAAGCGGTTC TCGACCGGCG ACATGCTGAA TCCGCGCGAC AACATACTCG CGGGCGCACA GTACCTGCGC TATCTGCTGG ACCTGTTCCG CGATGATCTG GAACTTGCGC TGGCGGCCTA CAACGCTGGC GAGAATGCGG TGATCCAGGC GGGAAACCGG ATCCCGGCCT ACGCGGAAAC GCAGGCCTAC GTACCGATGG TCATGGCGCA CTACCGCAGG CTGCTGGCCT CGGGGTAA
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Protein sequence | MYWEGTPMTE RKPSTLPRTI LFTVVVIVGL AFARVARAQI FGAVSADGSI TLTNTAGNPH LHLLVAGNPP AERKPREPRD LPTDAALFAT FISEASRNSH LPPELIRAVI AIESRFNPNA VSRKGAIGLM QLMPDTAKRF STGDMLNPRD NILAGAQYLR YLLDLFRDDL ELALAAYNAG ENAVIQAGNR IPAYAETQAY VPMVMAHYRR LLASG
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