| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4547 |
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| Symbol | |
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| ID | 4041406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 1152684 |
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| End bp | 1153841 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637979969 |
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| Product | outer membrane porin signal peptide protein |
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| Protein accession | YP_586681 |
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| Protein GI | 94313472 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.000157102 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.308815 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGA CGCTGTTCGC CGCCATCGCC GGCGGCCTGC TTGCGCAAGG GGCGCAGGCA
CAATCGTCCG TGACGCTCTA TGGCGTTGTG ACGACGAGCA TCCAGTACGT CAACCACGTG
CAGAACACCA ACAACGGCGT GCTGGCACCG GGCAGCGGGT CGGACGTGTT CATGAACTCG
TCGGGCATCG CGCAGTCGCG TTTCGGCCTG CGCGGTATCG AGGATCTTGG CGGCGGGCTC
CAGAGCCTGT TCGTGCTGGA GAACCAGTTC AATACCGACA ACGGACAGAT GGGTAACGGC
GGCCTGCTGT TCGGCCGTCA GGCTTACCTG GGTCTGCAGA ACCAGTGGGG GAAGCTGACG
TTTGGCCGCC AGTACACGTC AGCATTCCTG ATCATGGGTA GCTTCACGCC GGCGGCGTAC
GCGCCCGAGT TCGAGCCCGT GGTCGGCATT GCCGGGGCGA ACTTCCGCGA AAACAACATG
GTCCAGTACC AGGGCACGTT CGGGCCGGTT TCGCTGATGA CGCACTGGTC GTTCGGCGAG
CGCACCGGTA CGTTCGCGGC CGGTTCGGCG TACGGTATCG GCGCGTCCTA CCAGTCTGGT
CCGTTCGGTG TCGCGGCGGC CTATGACGAA GTCAAGACGT TGAATACCGC ACAGGCAACG
GGCGCATCGG GTTCGAACGA CTACGGCCGC GACATGCGCG CGATGGTCGC GGGCAGCTAC
CGTCTCGGAC TGGTGAAGAT GGTCGCCGGC TATCGCTGGG GCAACTCGGT GGCGCCGTCG
ACCGGCACGC CGACGCTATT GCCGCATCGC GACAACATGT ATTGGGCCGG CGTGTCCTGG
GACGCCACGG CCGCGCTGCG CCTGACCGCG GCGTACTACT ACGACGACAT CAAGGACGCG
ACGATCGCTG GGCAGCACGT CAACCCGAAG AATCCTCAGC AGTACCTGGC GCTGGCCGAC
TACAACCTTT CCAAACGCAC GGATGTCTTC TTCGCGGTGA TGTACGCACG CAACGCGTCG
CTGAACTGGG ACAACATCTC GTATTTGCCG AACGGTCAGT CGGTGGGGTA TCTGCCGTCG
ACCTCGCAGG TCTATTACAA GACGCCTGAT GCCAGCGGTC AGTTGGGCGT TTCACTGGGT
CTGCGCCACA TCTTCTGA
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| Protein sequence | MKKTLFAAIA GGLLAQGAQA QSSVTLYGVV TTSIQYVNHV QNTNNGVLAP GSGSDVFMNS
SGIAQSRFGL RGIEDLGGGL QSLFVLENQF NTDNGQMGNG GLLFGRQAYL GLQNQWGKLT
FGRQYTSAFL IMGSFTPAAY APEFEPVVGI AGANFRENNM VQYQGTFGPV SLMTHWSFGE
RTGTFAAGSA YGIGASYQSG PFGVAAAYDE VKTLNTAQAT GASGSNDYGR DMRAMVAGSY
RLGLVKMVAG YRWGNSVAPS TGTPTLLPHR DNMYWAGVSW DATAALRLTA AYYYDDIKDA
TIAGQHVNPK NPQQYLALAD YNLSKRTDVF FAVMYARNAS LNWDNISYLP NGQSVGYLPS
TSQVYYKTPD ASGQLGVSLG LRHIF
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