| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4499 |
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| Symbol | rpoJ |
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| ID | 4041358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 1100615 |
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| End bp | 1101115 |
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| Gene Length | 501 bp |
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| Protein Length | 166 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637979921 |
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| Product | RNA polymerase sigma J factor |
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| Protein accession | YP_586633 |
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| Protein GI | 94313424 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.00864259 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0452854 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATCCAG GTACCCGTTC GCAGGTCGAT GTCCTTTACA GCCGGCATCA CGCATGGCTG
CAAGGCTGGC TGTTGCGAAA GATCGGCAAT GCATGCGATG CGGCGGACAT CGCCCAGGAT
GTATTCGTCA GGGTGCTTCA CAGGAAAGTC GTCGAGATCC GTGAGCCGCG CACCTACCTG
GGCACCATTG CCAATGGGCT GGTCATCGAT TTCTGGCGGC GGCGGGAACT TGAGCAAGCA
TGGCTGGAGA CGCTGGCTCA ATTGCCGGAA GCACATACGC CATCGCCCGA AAGCCGTCTG
CACTTCCTGC AGACGTTGAT CGAGATCGAT CAGATGCTCG ATACGCTGAA GCCGAACGCG
CGCACGGCAT TCCTGCTGGC GCAGCTCGAC GGCCTGACTT GCCCGCAGAT CGCGGAGCGC
ATTGGCATGT CGCTGGCGAC CGTCGAGCGG TACATCAGCC AGGCGCTGCG CCGATGCTAC
GCGTTGCAGT TCGGCGCTTA G
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| Protein sequence | MDPGTRSQVD VLYSRHHAWL QGWLLRKIGN ACDAADIAQD VFVRVLHRKV VEIREPRTYL
GTIANGLVID FWRRRELEQA WLETLAQLPE AHTPSPESRL HFLQTLIEID QMLDTLKPNA
RTAFLLAQLD GLTCPQIAER IGMSLATVER YISQALRRCY ALQFGA
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