Gene Rmet_4403 details

Gene Information

• Locus tag: Rmet_4403
• Symbol: shc
• ID: 4041261
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cupriavidus metallidurans CH34
• Kingdom: Bacteria
• Replicon accession: NC_007974
• Strand: -
• Start bp: 998718
• End bp: 1000703
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 637979824
• Product: Squalene cyclase
• Protein accession: YP_586537
• Protein GI: 94313328
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1657] Squalene cyclase
• TIGRFAM ID: [TIGR01507] squalene-hopene cyclase; [TIGR01787] squalene/oxidosqualene cyclases

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.122673
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 12
• Fosmid unclonability p-value: 0.247773
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCAGAA AAACAATCCC CGCATCGGAA CTCGATGCTG CGATCGTCCG CGCACGCGAC 
GCATTGCTGG ACCGCCAGCA CCCCGACGGC CACTGGTGTT TCGAACTCGA ATGCGATGCC 
ACCATCACGG CCGAGTACAT CCTGATGATG CACTTCGTCG ACGAGATCGA CACCGCGCTG 
CAGGCCCGCA TGGCGAAGTA CCTGCGCGCG GTGCAACGGC TCGACGGCCA TGGCGCATGG 
GACCTCTACT TCGGCGGCGA TCTCGATATC TCCTGCAGCG TCAAGGCCTA CTTCGCGTTG 
AAGGCGGCGG GCGATCCGCC GGATGCGCCG CATATGGTCA GGGCGCGCGA AGCCATCCTG 
GCGCGCGGCG GCGCGGCGAA GTCGAACGTG TTCACGCGCA TCCTGCTGGC GACCTTCGGC 
GAGATCCCTT GGCGCGGCAC GCCGTTCATG CCGGTGGAAT TCGTGCTGTT TCCGCGCTGG 
GCGCCGATCC ACATGGACAA GGTGGCCTAC TGGGCGCGTA CCACGATGGT GCCGCTGCTG 
GTGCTGTGCT CGATACGCGC CGCCGCGAAG AATCCGCTTG GCGTGCATGT GCAGGAACTG 
TTCGTCACGC CGCCCGAACT GGAGCGCGAA TACTTCCCGC GCAAGCGTGG GCTGCAGCAA 
GCGTTTCTGG TCGCGGACCG CGTGGTTCGC CATCTCGAAC CGCTGATTCC GCGTGCATTG 
CGCCGCCGGG CCATCCAGCG CGCGGTGGAA TGGTCCGAAG CCCGCATGAA CGGTGAAGAC 
GGCTTCGGCG GCATCTTCCC GCCGATGGTG TACAGCTACG AGATGATGGT GCTGCTCGAC 
TACCCGGAGG ATCATCCGTT GCGGGTGGAG TGCAAGGCCG CGCTGAAGAA GCTCGTGGTC 
CATCGCGACG ATGGTTCGTC GTATTGTCAG CCCTGCCTGT CGCCGGTGTG GGACACAGCC 
TGGAGCGTGA TGGCGCTCGA ACAGGCACCC TCTGACGCAC GCACCGAAAC CGCCATCGCC 
CGCGCCTACG ACTGGCTCAC CGATCGTCAG GTGCTGGACC TGCGCGGCGA CTGGGAAAAC 
AATGCTGCGC CCAGCACGCC GCCTGGCGGC TGGGCATTCC AGTACGAGAA CCCGTACTAC 
CCGGACATCG ACGATTCGGC CGTCGTCCTG GCGATGCTTC ACGCGCGTGG CAAGCGCACC 
GGCCAGCCCG GGCGCTACGA GATGCCCGTC GCGCGTTGTC TGGACTGGAT CATCGGGCTG 
CAGTCGCGCA ACGGCGGCTT TGGCGCGTTC GATGCGAACT GCGATCGCGA CTTTCTCAAT 
GCGATCCCGT TCGCCGATCA CGGCGCTCTG CTCGATCCTC CAACCGAGGA CGTCTCCGGC 
CGCGTGCTGC TGGCACTTGG CATCACCGAG CGTCCGCAGG ACGCTACCGC ACGCGAGCGC 
TGCATCCAGT ACCTGCGCGA CACGCAACAG CCCGATGGCA GTTGGTGGGG ACGCTGGGGC 
ACCAACTACA TCTACGGCAC CTGGAGCGTG CTGGCGGGCC TGGGGCTCGC CGGTGTCGAT 
CGCAAGCTGC CGATGGTGCG CAACGGCCTG CAATGGCTGC GCGGCAAGCA GAACGCCGAC 
GGCGGCTGGG GCGAGACGAA CGACAGCTAT GCCCGCCCGG AACTGGCCGG CAAGCACGAA 
GACGGCAGCA TGGCCGAGCA AACGGCGTGG GCCATGCTCG GACAGATGGC CGTCGGCGAA 
GGAGATGCGG ATTCGGTGCA TCGTGGCGCC GCGTATCTGC TCGATGCGCA GAACGAAGAT 
GGCTTCTGGA TGCACCCGTA TCACAACGCA CCGGGCTTCC CGCGCATCTT CCACCTGAAG 
TACCACGGGT ACACAGCGTA CTTCCCGCTG TGGGCGCTTG GCCGATACCG GCGGCTTGCG 
GCCGCGCGCG CGTCGGCTAT GCAAACGGCG AAAGCCGAAT CCGCCGAATC CATGACGGCG 
CACTGA 

 

Protein sequence

MTRKTIPASE LDAAIVRARD ALLDRQHPDG HWCFELECDA TITAEYILMM HFVDEIDTAL 
QARMAKYLRA VQRLDGHGAW DLYFGGDLDI SCSVKAYFAL KAAGDPPDAP HMVRAREAIL 
ARGGAAKSNV FTRILLATFG EIPWRGTPFM PVEFVLFPRW APIHMDKVAY WARTTMVPLL 
VLCSIRAAAK NPLGVHVQEL FVTPPELERE YFPRKRGLQQ AFLVADRVVR HLEPLIPRAL 
RRRAIQRAVE WSEARMNGED GFGGIFPPMV YSYEMMVLLD YPEDHPLRVE CKAALKKLVV 
HRDDGSSYCQ PCLSPVWDTA WSVMALEQAP SDARTETAIA RAYDWLTDRQ VLDLRGDWEN 
NAAPSTPPGG WAFQYENPYY PDIDDSAVVL AMLHARGKRT GQPGRYEMPV ARCLDWIIGL 
QSRNGGFGAF DANCDRDFLN AIPFADHGAL LDPPTEDVSG RVLLALGITE RPQDATARER 
CIQYLRDTQQ PDGSWWGRWG TNYIYGTWSV LAGLGLAGVD RKLPMVRNGL QWLRGKQNAD 
GGWGETNDSY ARPELAGKHE DGSMAEQTAW AMLGQMAVGE GDADSVHRGA AYLLDAQNED 
GFWMHPYHNA PGFPRIFHLK YHGYTAYFPL WALGRYRRLA AARASAMQTA KAESAESMTA 
H