Gene Rmet_4313 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_4313 
SymbolemrB 
ID4041171 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp906714 
End bp908273 
Gene Length1560 bp 
Protein Length519 aa 
Translation table11 
GC content59% 
IMG OID637979734 
ProductEmrB/QacA subfamily drug resistance transporter EmrB/QacA subfamily 
Protein accessionYP_586447 
Protein GI94313238 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.221142 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAAATC CGATGACAAG CGAATTACCG CCGCCGCTGA CCGGTGGCAA GCTGGCAATG 
GGCAGTCTGG CCGTCGCGCT GGCCACATTC ATGAACGTGC TGGATTCATC CATTGCCAAT
GTCGCCATCC CGACTATCTC TGGCAACCTC GGCGTCTCCG TGGATGAAGG CACTTGGGTG
ATCACGCTGT TCGCGGCCGC CAATGCGGTA GCCATTCCAC TGACGGGGTG GCTGACCCAG
CGCGTGGGGC AGATCCGTCT GTTCGTGGGA TCGATTCTGC TGTTCGTCCT GTCGTCGTGG
CTATGCGGCG TCGCGCCCAA TCTCACTTTT CTTCTCGCGG CGCGAATCCT TCAGGGAGCC
GTCGCGGGTC CGATGATTCC GCTCTCGCAA GCAATTCTCC TGGGGTCCTA TCCCAAGGAG
AAAAGCGGTC AGGCACTCGC GTTGTGGGCG ATGACCGCTA CCGTGGGACC AATAGCCGGC
CCGGCTTTGG GGGGATGGAT GACTGACAGC TATTCCTGGT CATGGATCTT CTACATCAAC
ATCCCCGTTG GGCTGTTTGC TGCCGCAGTC ACCTGGGCGA TCTATCGTAG CCGCGAGACA
ACAACCCGTA TTCTCCCGAT CGACGCCATA GGACTGGCAG CGCTTGTCAC CTGGGTGGCA
GCCCTTCAGA TCATGCTCGA CAAAGGCAAG GATCTCGACT GGTTCGCTTC GCCGGTGATC
ATCAGCCTGG CCATTGTCGC CCTACTCGGC TTCCTGTTCT TCGTGATCTG GGAACTGACC
GAAGCCAATC CGATCGTCGA TTTGAGGCTG TTTAAAGGAC GCAACTTCCT GGCCGGAACC
ATCGCAATAT CGGTGGCCTA CGCGGTCTTC TTCGCGAATC TGGTCGTGCT GCCGCAATGG
ATGCAGCAGT ACCTCGCCTA TCCAGCCGTC AATGCCGGCC TTGTCACGGC GCCATTGGGC
ATCTTCGCGG TGGTGCTTGC GCCGGTCCTT GGCAAACTGA TGCCAAAAGC CGAGTTGCGC
ATTCTCTCCA CCCTTTCGTT TCTCGGCTTT GCCGCGGTGT TCTTCATGCG CTCCCACTAC
ACGACGGGAG TCGACACATT CACGTTGGTT CTCCCAACGC TGCTGCAGGG CATTCCAACA
GCATTGTTCT TTGTTCCGTT GACGGCCATC ATTCTTTCCG GTCTCCCACC AGACAAGATC
CCCGCCGCGG CCGGACTGTC GAACTTTGTC CGCGTGTTCT GCGGCGCTGT GGGAACGTCA
CTTGCGACCA CTGTGTGGAA CGACCGCGCC ATACTGCATC ACGCACAACT AGTCGAAAAG
GCGAACCCTG GTAATCCGAA CTACAGTGCC GCGCTGGAGG CCATCCAGTC CGTAATGCAC
CTATCCCCTG GCCAGGCGAC CGCCTACTTT GAAAGACAGC TCAATACCCA GGCGATCATG
CTGGGCCTGA ACGACATCTT CTGGATATCA GCCGTCATCT TCGTCGCCAT TGTTCCACTG
ATCTGGCTGA CCAAGCCAGC GCGTGGCGCG GCGTCCGGTG CGGCATCCGC TGCCCACTAG
 
Protein sequence
MPNPMTSELP PPLTGGKLAM GSLAVALATF MNVLDSSIAN VAIPTISGNL GVSVDEGTWV 
ITLFAAANAV AIPLTGWLTQ RVGQIRLFVG SILLFVLSSW LCGVAPNLTF LLAARILQGA
VAGPMIPLSQ AILLGSYPKE KSGQALALWA MTATVGPIAG PALGGWMTDS YSWSWIFYIN
IPVGLFAAAV TWAIYRSRET TTRILPIDAI GLAALVTWVA ALQIMLDKGK DLDWFASPVI
ISLAIVALLG FLFFVIWELT EANPIVDLRL FKGRNFLAGT IAISVAYAVF FANLVVLPQW
MQQYLAYPAV NAGLVTAPLG IFAVVLAPVL GKLMPKAELR ILSTLSFLGF AAVFFMRSHY
TTGVDTFTLV LPTLLQGIPT ALFFVPLTAI ILSGLPPDKI PAAAGLSNFV RVFCGAVGTS
LATTVWNDRA ILHHAQLVEK ANPGNPNYSA ALEAIQSVMH LSPGQATAYF ERQLNTQAIM
LGLNDIFWIS AVIFVAIVPL IWLTKPARGA ASGAASAAH