| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4221 |
|---|
| Symbol | omp |
|---|
| ID | 4041079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 805896 |
|---|
| End bp | 806984 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637979644 |
|---|
| Product | outer membrane porin |
|---|
| Protein accession | YP_586357 |
|---|
| Protein GI | 94313148 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCGA GATTGACAGT TCCCGCACTC GCAGCATTGC CGTGCTGCGT TTCGGCGGAA
TCCCGGGCAA ACGTGACCCT CTACGGCGTC GTGGACGCAG GCGTGAGCTT CACCAACAAC
CAGGTGGGCG GAGGCAGCGT GGTCAGGCAG ACGTCGGGCA GCCTTTCCAG TTCGCGCTGG
GGCGTACGCG GATCCGAGGA CCTTGGCCAA GGGCTGAAAG CGGTGTTCGT GCTCGAAAGT
GGCTTTGATG TCGACACTGG CAAATCAGCG CAGGGCGGAC GGCTGTTCGG GCGATCGGCA
TATGTGGGGT TGGAGAGCCA ATGGGGCAGC ATCCTGTTTG GGCGTCAGCA GAGCGCGTTG
TTCGACATGA TCGGCGCGTT CGACCCGATG GCGCTGTCGC CGAGGTGGTC CATCTTCAAT
CAGGATCTTG CCCTGGTCGC CCGGCCGGAT AACACCATGA AGTACGTGGG GAAGTTCGGC
GGCTTGACGG CAACGGCGAT GTACAGCTTT GGCGCGGAAA GTACCACGGT GGATGGCAGC
GAGGTGCCTG GGAATGCCAA GCTAGGTCGG GAGTTCGGCT TTCGCCTGAG CTACAACAGT
GGTCCGTTCA GCATTGGCAC GGCCTATGAC GAGGTCAACA CCGGCACATT GACCACGAAC
CGCGACGCCA CGTCGCGTCG GGCCACGGTG GCCGGTACCT ATGCGCTTTC CACCCTCAAG
GTGTTCGCCG GCTACCGATG GGCAAAGGCC TACGATGGAG CGATTCTCGT GGGTGCGCTG
CCAGGTGTGT CGAATCAAGC GTCGAACCTG TGGTGGACTG GCGTGATGTG GCAGGCGGGG
CCGGCGGTGA CGCTTAGCGC GGCCGCTTAT TACCAGGATT TCCGCAACAC CGGTGGTGAC
CCGTGGCTGT TCGTCGCCAC GGGCCGGTAC GCATTCTCGA AGCGTACCGA GGCCTACCTG
ACGCTGGGCT ATGCACTGAA TCAGGAGAAC TCGAACATGG GTCTTGGCAA TGGCGCGGCC
GGCTTCGGTC ACACGCCGCC GGGCAGCAAT CAGTTCGGCA CGACCCTCGG GATAAAGCAC
ATTTTCTGA
|
|---|
| Protein sequence | MKARLTVPAL AALPCCVSAE SRANVTLYGV VDAGVSFTNN QVGGGSVVRQ TSGSLSSSRW
GVRGSEDLGQ GLKAVFVLES GFDVDTGKSA QGGRLFGRSA YVGLESQWGS ILFGRQQSAL
FDMIGAFDPM ALSPRWSIFN QDLALVARPD NTMKYVGKFG GLTATAMYSF GAESTTVDGS
EVPGNAKLGR EFGFRLSYNS GPFSIGTAYD EVNTGTLTTN RDATSRRATV AGTYALSTLK
VFAGYRWAKA YDGAILVGAL PGVSNQASNL WWTGVMWQAG PAVTLSAAAY YQDFRNTGGD
PWLFVATGRY AFSKRTEAYL TLGYALNQEN SNMGLGNGAA GFGHTPPGSN QFGTTLGIKH
IF
|
|---|
| |