| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4160 |
|---|
| Symbol | pelF |
|---|
| ID | 4041018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 741378 |
|---|
| End bp | 742967 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637979583 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_586296 |
|---|
| Protein GI | 94313087 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0468499 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.187813 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGA TTCTGGTCAA GGGAACGTCC GCGGACGTCA TGCTGCTTCT GGAAGGCACG
TTTCCTTATG TGAGTGGTGG GGTGTCGAGC TGGGTCAATC AGATGATCCG TGCCTTCCCC
GATATCCGGT TCGGCATCGT CTTCATCGGC AGCCGCCGAC AGGACTATGG CGAGATGGCC
TACGCGCTAC CGGACAATGT GGTGCATCTG GAAACGCATT TCCTTTACGA CTTCGCGCCG
CCGCCGATGG TGCATGGCAC GAAGGGCGAT GCGCACGCCT TCGACCGCTC GGACGAACTG
CACGAAATGC TGCGTCAGCG CGGCAGGGAG GTGGAGGCGG GGGATCTGAT TCGCGAACTG
ATGCCAGCGC TGGGCGAGGG CGGCGCGCTG TCCGAGGATG CGTTCCTCTA CAGCAAGCGG
GCGTGGGACA CGATCACCGA TCAGTACCGA CGGTACTGCA CCGATCCGTC GTTCACGGAC
TATTTCTGGA CTGTCCGGAT CATGCACAAG CCGCTGTGGC AGCTCGTGCG GATCGTGGAC
GGGCTGATTC CCGCCAAGGT CTATCACACG GTTTCCACCG GATACGCGGG ATTCCTCGGT
GCGATGCTGC GGCATCGCAC TGGGCGCCCG CTGCTGGTCT CGGAGCACGG CATCTATACG
AAGGAACGGA AGATCGACCT GTTCCAGAGC CAGTGGATCC GTGATAACCG GAACATCTTC
GAGCGCGACA TTTCTCAGAT TAGCTACTTC CGCGAGCTCT GGGTGCGCTT CTTCGAGACG
TTGGGTCGCG TCTGCTATGA AGCCGGTGAC GAGATCACGG CGCTGTACGA AGGCAACCGC
AGCCGCCAGG TGCTGGATGG CGCGCCGGCC GAGCGCACGC ACAATATCCC GAATGGCATC
AACCTGCCGC GCCTTTCCGC GCTGCGCGAG CGGCGCGCGC CGGGTGTGCC GCCGGTGCTG
TGCCTGATTG GCCGGGTGGT GCCCATCAAG GACATCAAGA CGTTCATTCG CGCGATGCTG
ACCGTGGTGC GGGAGTATCC CGATGCCGAA GGATGGATTG CCGGTCCCGA GGATGAGGAT
CCGGATTACG CGACTGAGTG TCGCAGCCTG GCCGAAAGCC TCGGGCTGGG CGGCAAGGTG
AAATTTCTCG GCTTCCAGAA AATCGACGAA CTGCTGCCGA AAGTCGGCGT GCTGGTGCTG
AGTTCGATTT CCGAGGCGTT GCCGCTGGTG GTGCTCGAAG GGTTCGCGGC GGGTGTGCCG
TGCGTGACGA CCGACGTCGG CTCGTGCAGC CAGCTCGTCT TCGGGCTGCC CGGCGAGGAC
GCGGCGCTGG GGACCGCGGG CGACGTGGTG CGCATCGCGG ACCCGGCGGC GCTGGCCGAT
GCGGCGCTGA AACTGATCAA GGAGCCCGCG CGATGGCAGG CGGCCCAGGC CGCCGGCATC
GCGCGGGTGG AACGCTACTA CACGCAGGAA CAGATGGTGG GCAGCTATCG CACGCTCTAT
GCATCGATGA TGGCGATGCC GGACAACACG CATCACGCAC GCGGCGGGGC AAGCCCGGCA
AAGTGCCCGG TGCACGGGGG AGGGCGCTGA
|
|---|
| Protein sequence | MSEILVKGTS ADVMLLLEGT FPYVSGGVSS WVNQMIRAFP DIRFGIVFIG SRRQDYGEMA
YALPDNVVHL ETHFLYDFAP PPMVHGTKGD AHAFDRSDEL HEMLRQRGRE VEAGDLIREL
MPALGEGGAL SEDAFLYSKR AWDTITDQYR RYCTDPSFTD YFWTVRIMHK PLWQLVRIVD
GLIPAKVYHT VSTGYAGFLG AMLRHRTGRP LLVSEHGIYT KERKIDLFQS QWIRDNRNIF
ERDISQISYF RELWVRFFET LGRVCYEAGD EITALYEGNR SRQVLDGAPA ERTHNIPNGI
NLPRLSALRE RRAPGVPPVL CLIGRVVPIK DIKTFIRAML TVVREYPDAE GWIAGPEDED
PDYATECRSL AESLGLGGKV KFLGFQKIDE LLPKVGVLVL SSISEALPLV VLEGFAAGVP
CVTTDVGSCS QLVFGLPGED AALGTAGDVV RIADPAALAD AALKLIKEPA RWQAAQAAGI
ARVERYYTQE QMVGSYRTLY ASMMAMPDNT HHARGGASPA KCPVHGGGR
|
|---|
| |