| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4056 |
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| Symbol | ccmF |
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| ID | 4040914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 622029 |
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| End bp | 624071 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637979480 |
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| Product | cytochrome c-type heme lyase CcmF |
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| Protein accession | YP_586193 |
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| Protein GI | 94312984 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.449676 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCGG AACTGGGCCA CTTCGCACTG ATCCTGGCCA TGCTCGTGGC GCTGGTGCTG
GCAACGCTGC CGATGGTGGG CGCGGCGCGC GGCAATGTTG CCTGGATGTG CCTTGCACGG
CCCGCCGCCT TCCTGCATGG CACGCTGCTG ATCGCGGCCT ACCTCTCGCT GACATACGCT
TTCGTCGACA ACGACTTCAG CGTGCTCTAT GTGGCGGCGA ACTCTAACAG CGCGCTGCCA
CTGATCTACC GCATGGCGGC GGTATGGGGC GGCCATGAGG GGTCGATGCT GCTGTGGTCG
CTGATGCTGG CGCTGTGGGC AATGGCCGTG GCTGGCTTCA GCCGCCGCCT GCCACTGGCG
TTCGTCGCCC GCGTGCTTGG CGTGATGGGG GGCATCAGCA CCGGACTGCT GCTGTTCGTG
CTGTTCGCAT CGAATCCGTT CCTGCGTCTG TTGCCCCGCG CGATGGAGGG GCGCGACCTC
AATCCGCTGC TGCAGGACCC CGGCATGGTG TTCCATCCGC CATTCCTGTA CATGGGCTAC
GTCGGCTTCG CGGTGGCATT CTCATTCGCG GTGGCGGCCT TGCTTGAAGG ACGACTCGAC
GCGGCCTGGG CACGCTGGTC GCGCCCGTGG ACGATCCTGG CGTGGATGTT CCTGACCATC
GGCATCGCGA TGGGCAGCAT GTGGGCCTAC TACGAACTGG GCTGGGGCGG CTGGTGGTTC
TGGGACCCGG TGGAGAACGC GTCGTTCATG CCCTGGCTGG CCGGCACCGC GCTGATCCAC
TCGCTGGCGG TCACCGAGAA GCGCGGCGCG TTCCGCGCCT GGACCGCTCT GCTGGCGATC
TTCACGTTCT CGCTGAGCCT GCTCGGCACG TTCCTGGTCC GCTCTGGCGT GCTTACCTCG
GTCCACGCGT TCGCGGTGGA TCCCCGGCGC GGCATCTTCA TCCTGACGTT GCTGGGACTG
GTCACGGGGC TGGCGCTCGC GCTATTCGCG TGGCGCGCGC CCCGGCTGAC CCAGCGCACC
GATTTCAACC TGACCTCGCG CGAGTCTTTT CTGCTGGCCA ATAACGTGCT GCTGGCCGTG
GCCGCCTCGG CGGTGCTGCT CGGCACGCTG TATCCGCTGC TGCTCGACGT GCTGGACCTC
GGCAAGGTAT CGGTCGGCCC CGAGTACTTC GAAGAAGTGT TCGTGCCGCT GATGGCCCCC
GCCGTGCTGC TGATGGGTGC CGCCCCGCTG GCACGCTGGG GACGCAGCGA CCTGCCCGAC
ATGGCCAGGC GACTGCGCTG GGCGGCCGTG GCAAGTGTGG TCATCGCGCT TGGGCTGCTG
GCCGTGCTGC GCAACAGCTC CGCCATGACC GGGCTCGGCC TCACGCTGGC CGCGTGGTGT
GCAATGAGCG GGCTGGCCAG CCTGGCCACG CAGATGCGGC ACGCGCGGGA CTGGCGCTCC
GGCCTGCGCC AGTTGCCGGC CGGCTACTAC GGCATGTTGC TGGCCCACAT CGGCGTGGGC
GTGTTCATCA CCGGCGTCAC GCTGGTCAAG AGCCAGGAGA GCGTGCGCGA GTTGTCGATG
CGCGTGGGCG ATTCGGTCGC GGTTGGCGGC TACGATTTCC GCTTCGACGG TGTGGCGCCG
GTCAGGGGAC CGAACTACGA CGCGCTGCGG GGCACGGTCA CGGTGACGCG GCAAGGCCGT
CCGGTCACCA CGCTCGCCAC CGAGCGGCGC GTCTACCGCA GCCAGGACAT GCCGACCACC
GAGGCCGCCA TCGACACCGG GCTCGCACGC GATCTCTATG TGGCGCTCGG CGATTCGTCG
GATGCCACGT CCGCCGATGC CCGCTGGGCG CTGCGGGTCT ACGTGAAGCC CTTCGTCTCG
TGGGTCTGGG GCGGCTGCGC GTTGATGGCG CTGGGCGGAC TCCTTGCCGC CAGCGACCGC
CGATATCGCG CGCGCCATCC GGCGGCAGCG GTCACGTCTG CGGTCACGGC CAATGACGAT
GCGGGGGCCC GGCCCGCCAC GCCACCGCTG ACGCTGCCTG CTGGCAAGGA GTCCGAAGCA
TGA
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| Protein sequence | MNPELGHFAL ILAMLVALVL ATLPMVGAAR GNVAWMCLAR PAAFLHGTLL IAAYLSLTYA
FVDNDFSVLY VAANSNSALP LIYRMAAVWG GHEGSMLLWS LMLALWAMAV AGFSRRLPLA
FVARVLGVMG GISTGLLLFV LFASNPFLRL LPRAMEGRDL NPLLQDPGMV FHPPFLYMGY
VGFAVAFSFA VAALLEGRLD AAWARWSRPW TILAWMFLTI GIAMGSMWAY YELGWGGWWF
WDPVENASFM PWLAGTALIH SLAVTEKRGA FRAWTALLAI FTFSLSLLGT FLVRSGVLTS
VHAFAVDPRR GIFILTLLGL VTGLALALFA WRAPRLTQRT DFNLTSRESF LLANNVLLAV
AASAVLLGTL YPLLLDVLDL GKVSVGPEYF EEVFVPLMAP AVLLMGAAPL ARWGRSDLPD
MARRLRWAAV ASVVIALGLL AVLRNSSAMT GLGLTLAAWC AMSGLASLAT QMRHARDWRS
GLRQLPAGYY GMLLAHIGVG VFITGVTLVK SQESVRELSM RVGDSVAVGG YDFRFDGVAP
VRGPNYDALR GTVTVTRQGR PVTTLATERR VYRSQDMPTT EAAIDTGLAR DLYVALGDSS
DATSADARWA LRVYVKPFVS WVWGGCALMA LGGLLAASDR RYRARHPAAA VTSAVTANDD
AGARPATPPL TLPAGKESEA
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