| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3955 |
|---|
| Symbol | |
|---|
| ID | 4040813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 514448 |
|---|
| End bp | 515623 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637979379 |
|---|
| Product | cytochrome c oxidase subunit II |
|---|
| Protein accession | YP_586092 |
|---|
| Protein GI | 94312883 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.113374 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATCG CCATCGCACT CGTCATCATT GTCGTTGCCT CGGTGCTCTT TCATTTCCTG
AGCCCGTGGT GGGCGACACC GCTGGCGTCC AACTGGAAAC AGATGGACGA CACGCTGACC
ATTACCCTCG TCATCACCGG CCTGTTCTTT GTCGTTATCA ACCTGCTCGT CGGATACATC
GTCTGGCGCT TCCGTCATCG TGCGGGGCAT CGCGCTGCCT ATGCGCCGGA GAACCCGAAA
CTGGAGCGCT GGCTGATCGG GTTGACCGCT GTGTGCATCA TCGCGTTGCT GGCACCAGGC
CTGATCGTCT ACGCGGAGTA CGTGCGGCCA CCACGCGATG CGATGGTCAT GGAGGTGGTG
GGGCAGCAGT GGCAATGGGC CTTCCGCTTC CCCGGCAAAA GTGGCCAGCT CGGTACCACG
GACCCGCGAT TCGTCAGCGG CACGAATCCA CTCGGCCTGA ATCCCGATGA TCCAAATGGA
CAGGACAACA TACTCGTCAT GGGGCCGGAG GTACACCTGC CGCTGAACCG GCCCATCAAG
GTGCTCCTGC GCTCGAAGGA CGTTTTGCAC GATTTCTATG TGCCACCGTT CCGCGCGCGC
ATGAACATGG TGCCCGGCAT GGTCACATCG TTCTGGTTCA CGCCCACCAA GACCGGTCGC
TTCGATATTC TTTGTGCACA ACTCTGCGGT CTGGGCCACT ACAACATGCG CGGCCACGTC
GTGGTCGAGG AGCAGGCCGC TTTCGACACG TGGCTTGCGA AGCAGCAGAC GTTCGCGATG
ACGCTGGCAA AGGTCGCCGC TCCCACCGCT GCGCCAGCCG AAGGCCCCGC TGTGGCGGGC
GCGTCGGCTG GCGCCGCCGA TCTCGTGGCG CAGGGCCGCG CACTGGCGCA AAGCAAAGGA
TGCGTGGGAT GCCATAGCGT CGATGGCAGC GTGGGTGTCG GCCCAAGCTG GAAGGGCCTG
TACGGCAGCA CGCAGACCTT CAGCAACGGC AGCAGCGCGA CCGTGAACGA TGCGTTCCTG
AAGACGGAGA TCGAGGACCC GCAGGCCCGC ATCGTCAAGG GCTTCGGGCC CGTCATGCCC
AAGTTGCCTG TTACCGATGC CGACGTGGTG GCGCTGTCGG CGTATATCCG TTCGCTGGGT
GCTGGCGCAA CGGGCACCCC GCAGGCCGGC AAATAG
|
|---|
| Protein sequence | MAIAIALVII VVASVLFHFL SPWWATPLAS NWKQMDDTLT ITLVITGLFF VVINLLVGYI
VWRFRHRAGH RAAYAPENPK LERWLIGLTA VCIIALLAPG LIVYAEYVRP PRDAMVMEVV
GQQWQWAFRF PGKSGQLGTT DPRFVSGTNP LGLNPDDPNG QDNILVMGPE VHLPLNRPIK
VLLRSKDVLH DFYVPPFRAR MNMVPGMVTS FWFTPTKTGR FDILCAQLCG LGHYNMRGHV
VVEEQAAFDT WLAKQQTFAM TLAKVAAPTA APAEGPAVAG ASAGAADLVA QGRALAQSKG
CVGCHSVDGS VGVGPSWKGL YGSTQTFSNG SSATVNDAFL KTEIEDPQAR IVKGFGPVMP
KLPVTDADVV ALSAYIRSLG AGATGTPQAG K
|
|---|
| |