Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_3924 |
Symbol | acrB |
ID | 4040782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007974 |
Strand | + |
Start bp | 480365 |
End bp | 483511 |
Gene Length | 3147 bp |
Protein Length | 1048 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637979348 |
Product | multidrug efflux system protein |
Protein accession | YP_586061 |
Protein GI | 94312852 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0170856 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTAATT TCTTTATCGA GCGGCCGATC TTTGCCTGGG TGATCGCGCT GGTCATCATG CTGGCCGGCG TGCTCTCCAT CAGAACGCTG CCGATCAACC AGTACCCGGC GATCGCCCCG CCGACCATCG CCATCTCCGT AACCTACCCG GGCGCTTCGG CGCAAACGGT GCAGGATACG GTGGTGCAGG TGATCGAGCA GCAGCTGAAT GGCCTGGATC GCCTCCGCTA CATCTCGTCG GAATCGAACT CCGACGGCAG CATGACCATC ACGGTCACGT TCGAGCAAGG CACCAACCCG GATATCGCGC AGGTGCAGGT GCAGAACAAG CTTGCCCTAG CCACGCCACT GTTGCCGCAG GAAGTTCAGC AGCAGGGGAT TCGCGTAACC AAGTCGGTGC GTAACTTCCT GCTGATCGTG GGTCTGATTT CGACCGACCC CAACATGACG CGGGAGGATT TGTCGAACTA CATCGTTTCG AACATCCAGG ATCCGCTATC GCGTACCGCA GGCGTGGGCG ACTTCCAGGT GTTCGGCTCG CAGTATGCGA TGCGGATCTG GCTGGACCCG GCCAAGCTCA ACAGCTACCA GCTCGCGCCG CTGGATGTGA GCAACGCGAT CAAGGCCCAG AACGTCCAGG TGGCTTCGGG TCAGCTTGGT GGCCTGCCGG CGGTTCGCGG ACAGCAGCTT AATGCGACGG TGATTGGCAA GACGCGTCTC CAGACCGCCG AGCAGTTTGG CGACATCCTG CTCAAGGTCA ATCCCGACGG CTCGCAGGTG CGCCTGAAGG ACGTGGCCGA TGTTGCTCTG GGTGGCCAGG ACTACACGAT CAACGCGCAG TACAACGGTC GCCCGGCATC GGGTATCGCG ATTCGCCTGG CATCCGGCGC CAACGCGCTG GAGACGGTCA AGAACATCCA CAATACGCTG GCTCAGCTGG AACCGACGTT CCCGCCGGGC ATCAAGGTGG TGTTCCCGTA TGACACGACG CCGGTGATCT CCGACTCGAT CCACGAGGTG ATCAAGACGC TGCTCGAGGC AATCGTGCTC GTCTTCCTGG TGATGTATCT GTTCCTGCAG AACTTCCGCG CCACGCTGAT CCCAACGATC GCGGTGCCGG TGGTGCTGCT CGGCACGTTC GGCGTGTTGG CCGCGTTTGG CTATTCGATC AACACACTGA CGATGTTCGG CATGGTGCTG GCCATCGGTC TGCTGGTGGA CGATGCCATC GTGGTGGTCG AGAACGTCGA GCGGGTGATG GCCGAAGACG GGCTGGGGCC AAAGGAAGCC GCACGAAAAT CGATGGGGCA GATCCAGGGC GCGCTGGTTG GTATCGCGCT GGTGCTGTCC GCGGTGTTCC TGCCGATGGC GTTCTTCGGG GGCTCGACGG GTGTGATCTA TCGCCAGTTC TCGATCACGA TCGTTTCCGC GATGGTGCTG TCTGTGCTCG TGGCGCTTGT TCTCACGCCG GCACTGTGCG CGACGATGCT CCAGCCGATC GAGAAGGGCG ATCACGGCGA GCACAAGCAG GGCTTCTTCG GCTGGTTCAA CCGCAGCTTC ATCCGGTCGA CGCAAAGCTA TGAGCGTGGG GTCTCCGGCA TTCTCAAGCG CCGGGCTCCG TTCCTGCTGA TCTATCTGGC GATCGTGGTG GTGATGGGAT TCCTGTTCAC GCGCATCCCG ACCTCGTTCC TGCCGGAAGA AGATCAGGGC GTGCTGTACG CGCAGGTGCA GACACCGGCC GGCTCGTCGG CCGAGCGCAC GCAGGCCGTG CTTGACCAGA TGCGCAACTA CCTGCTGAAT GACGAAGGCA AGATCGTGGA GTCGCTCTTT ACCGTGAACG GCTTCAACTT TGCCGGCCGT GGCCAGAGTT CGGGTCTCGC GTTTATTCTG CTGAAGCCGT TCAAGGATCG CGAAGGCGAT GCCACGAGTG TGTTCGACCT GACCAAGCGG GCGCAGGCCA AGTTCAGCAC GTTCCGCGAC TCGCTGGCAT TTGCCTTCGC GCCGCCGGCG GTGCAGGAAC TCGGTAACGC CACGGGCTTC GACTTCTATA TGCAGGATCA GGCCGGCCTG GGGCACGACG CGCTGATGAA CGCGCGCAAC AAGTTCCTGT CGCTCGCAGC CAAGAACCCC GCGTTGCAGC GAGTGCGTCC GAACGGCCTC AATGACGAGC CGCAGTACGT CCTCGAAATC GACGATGAGC GCGCGCGCGC GTTGGGGCTG TCTCTGGCGG ACATCAACAG CACGGTGTCA ATTGCCTGGG GTTCCAGCTA CGTGAACGAC TTCATTGACC GGGGCCGCGT CAAGCGTGTG TACCTGCAGG GTCGGCCGAA CTCGCGAATG TCGCCAGAGG ACCTCAACAA GTGGTTCGTG CGCAACGACA AGGGTGACAT GGTGCCGTTC TCGTCGTTTG CCACGGGCAA GTGGGGCTTT GGATCGCCGA AGCTGCAGCG CTACAACGGT GTGCCGGCGG TGGAAATCCT CGGTGAGCCG GCGGCAGGCA AGAGCTCGGG TGAAGCCATG GCGGCGGTAG AGGAAATCAT GAAGCAGATG CCAGCCGGCA TCTCCTATTC GTGGACGGGC CTGTCGTACG AAGAACGGTT GTCGGGCTCC CAGGCACCAG CGCTGTACGC GTTGTCGCTG CTGGTGGTCT TCCTCTGTCT GGCGGCGCTG TATGAAAGCT GGTCGATTCC GTTCTCGGTG ATGCTGGTGG TGCCGCTCGG GGTGATCGGC GCGCTGCTGG CTACACTCGC ACGAGGACTG TCGAACGACG TGTTCTTCCA GGTGGGGCTG TTGACCACGG TGGGCCTTTC CGCGAAGAAC GCGATTCTGA TCGTGGAATT CGCCAAGGAA CTGCACGATC ACGGCAAGGG CCTCGTGGAG GCGGCGGTGG AGGCGTGCCG AATGCGTTTA CGCCCCATCA TCATGACCTC GATGGCGTTC ATGCTGGGCG TGTTCCCGCT GGCGGTGTCG CAAGGCGCCG GCGCGGGTAG CCAGCACGCC ATCGGTACCG GCGTGATCGG CGGCATGATC ACCGCCACCG TGCTCGCCAT CTTCTGGGTG CCGCTGTTCT TTGTCGTGGT CAGCGCGCTC AAGGAGCGGC GCGGCAAGTC CGATTCGTCC TCCCTCGAGA AGGGAGCCCA AGCATGA
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Protein sequence | MSNFFIERPI FAWVIALVIM LAGVLSIRTL PINQYPAIAP PTIAISVTYP GASAQTVQDT VVQVIEQQLN GLDRLRYISS ESNSDGSMTI TVTFEQGTNP DIAQVQVQNK LALATPLLPQ EVQQQGIRVT KSVRNFLLIV GLISTDPNMT REDLSNYIVS NIQDPLSRTA GVGDFQVFGS QYAMRIWLDP AKLNSYQLAP LDVSNAIKAQ NVQVASGQLG GLPAVRGQQL NATVIGKTRL QTAEQFGDIL LKVNPDGSQV RLKDVADVAL GGQDYTINAQ YNGRPASGIA IRLASGANAL ETVKNIHNTL AQLEPTFPPG IKVVFPYDTT PVISDSIHEV IKTLLEAIVL VFLVMYLFLQ NFRATLIPTI AVPVVLLGTF GVLAAFGYSI NTLTMFGMVL AIGLLVDDAI VVVENVERVM AEDGLGPKEA ARKSMGQIQG ALVGIALVLS AVFLPMAFFG GSTGVIYRQF SITIVSAMVL SVLVALVLTP ALCATMLQPI EKGDHGEHKQ GFFGWFNRSF IRSTQSYERG VSGILKRRAP FLLIYLAIVV VMGFLFTRIP TSFLPEEDQG VLYAQVQTPA GSSAERTQAV LDQMRNYLLN DEGKIVESLF TVNGFNFAGR GQSSGLAFIL LKPFKDREGD ATSVFDLTKR AQAKFSTFRD SLAFAFAPPA VQELGNATGF DFYMQDQAGL GHDALMNARN KFLSLAAKNP ALQRVRPNGL NDEPQYVLEI DDERARALGL SLADINSTVS IAWGSSYVND FIDRGRVKRV YLQGRPNSRM SPEDLNKWFV RNDKGDMVPF SSFATGKWGF GSPKLQRYNG VPAVEILGEP AAGKSSGEAM AAVEEIMKQM PAGISYSWTG LSYEERLSGS QAPALYALSL LVVFLCLAAL YESWSIPFSV MLVVPLGVIG ALLATLARGL SNDVFFQVGL LTTVGLSAKN AILIVEFAKE LHDHGKGLVE AAVEACRMRL RPIIMTSMAF MLGVFPLAVS QGAGAGSQHA IGTGVIGGMI TATVLAIFWV PLFFVVVSAL KERRGKSDSS SLEKGAQA
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