| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3679 |
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| Symbol | |
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| ID | 4040495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 217347 |
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| End bp | 219329 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637979102 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_585820 |
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| Protein GI | 94312611 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0655415 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGCCA CGAGTTCCAG CCTCCTGCTG CTCGCAGCCC TGCTCGGCAT TGCCGCGGCA
GTGGGCGTGC GCGCGGCCAA AACCGAAGGC GGGCCCGGGC GCAAGGCCAT GTGGTCGATG
ACGTGGCCGG CCGCGCTGAT GTCGCACGGG ATGCTCGGTA TGCCCCTTTG GGTGACACTG
GCATCCGGCA CGCTGACCGC CGCCAACGAT GGCGCGCGGA TGGCAGCCAC GTTTGCCGCC
ACGCTGGCGG CCAGCCTGGC TGCGTCGCAT CTGTTCGGGC CGCCGCTTCA GTGGCTGCGA
CAGGGCGCGC GTGGCTGGCG CGTGGCGGTT GCCGCCGCGA TGCTGGCTGG CGCCGGTCTG
GTCGCCGTGG CCGGCGCGCG GCTGGGGCGT GCCTGTGGCG GCACCGTCAT GACGGCGCGC
GCCTGTATCG ACACGGCCGA CTTTTCGGAA GCCAGCTTCC TGGCCTGCGG GATCGCATTG
CTGTGCGTGG CGATGTTCGC CATGCATCGC GCCCAGGCGC GCGGATGGCT CCAGGGGCAG
GCCGAGCTGG CAATGCACGA CGATGTCGCC GATGACCATG CCACGATGCC TATGCTTCGG
GCCGGTGACG GACGTGTTTC GCGCCGCGGG CCGGGCCGCA TTCCCGGCCT GACGATCCGG
CCTTCCGGCA GTGGCCTGTC ACCGGTCGGC GAGTACAGCG TCAGCACCGA CCTGCCAGAC
CGCACCGCCT TCGCCCGCTG GCTCGATCAA AGCATCGCCC ATGCGCGCCT GGCAGAGACG
GGATGCGCGG TGCTGCTGAT CCATATTGCC GACTATCGCG AGGTCGACGA AGTTTTCGAG
GTTCGTGCCG ATGACATCCT GGCACAGGAC GCGGGCGCGC TCGCCCAGGC CGCGCTGGAG
CCGCACGACT TCCTGGCACG GCTGGCGCGC GACGAGTTCG CCGTTGGCGT GCCCAATCTG
GTGCACCACA GCCGCGCGCA TGACCTGGGC TCTCGCGTGC TCGGGTCTCT GGCCGAGTTC
GTCGCGGCAC GCGGCCTGCA GATGCAGATC GGCGTGAACA TCGGGATCGC GATTTATCCC
CGCGATGCGG CTACATCCGA AGGGTTGATG CAGGCAGCGC GCGTGAGTCT GTCGGAGGCG
CGCGAAAGCG GTTCGAACCA GGTGCGCGTG TTCAACTCGG CCGCGGGGGA GCGCGCGCGC
CGCACGCGCG TGATCCGGCG CGACCTTTGG CCCGCCATTC AGGACGACGG CCTGTCGTTG
ATGTTCCAGC CGAAGTTCGA CGTGAAGACG CGCCAGGTGG TGGGTGCCGA AGCGCTCTGC
CGCTGGCGAC ATCCCACGCT GGGTGCGGTC AGTCCGGTCG AATTCATCAT GGTGGCCGAG
CAGTCGGGCC AGATCGACAA GCTCGACGAC TGGGTGATCT CGCGGGTCTG CGGGCAGGTG
CGAAGCTGGC AGGACGCTGG GCTGCCGGTG GTGCCGGTAG CGATCAACGT GTCCGGGACG
CGTTTCGCGA GCCGCAACTT TCCGCGCTAT CTGCTCGAAC ATATCCACCA GCACGACATC
CCGCCTTCTG CGATCACGCT GGAGATCACC GAGACCGCCG CGATGAAGGA CATCGCCAAG
TCGCTGGAAA CGCTGGCGGA GCTGCAATCG CTCGGCATCC AGGTGGCGCT CGACGATTTC
GGTAGCGGCT ACTCGAGCCT TGGTTATCTG AAACGACTGC GCGTGGGCAC CCTCAAGATC
GATCGCACGC TGATCGGCGG GCTCGATGCC GACCCGCAGG GTCGCGCCAT CGTCGGCTCG
ATGGTGGCGC TGGCGCACGA GCTGCGGATG AAGGTGGTGG CGGAGGGTGT CGAATCGGCC
TCGCAACTGG AAATCCTGCA CGGCATGGGC TGCGACGAAG TGCAGGGCTA CCTGCTGGCC
GTTCCGCTCG ACTCGCCCGG GTTTGCCGAC GTATTGCACG CGGCACGGCC GCTGGCGGTC
TAG
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| Protein sequence | MIATSSSLLL LAALLGIAAA VGVRAAKTEG GPGRKAMWSM TWPAALMSHG MLGMPLWVTL
ASGTLTAAND GARMAATFAA TLAASLAASH LFGPPLQWLR QGARGWRVAV AAAMLAGAGL
VAVAGARLGR ACGGTVMTAR ACIDTADFSE ASFLACGIAL LCVAMFAMHR AQARGWLQGQ
AELAMHDDVA DDHATMPMLR AGDGRVSRRG PGRIPGLTIR PSGSGLSPVG EYSVSTDLPD
RTAFARWLDQ SIAHARLAET GCAVLLIHIA DYREVDEVFE VRADDILAQD AGALAQAALE
PHDFLARLAR DEFAVGVPNL VHHSRAHDLG SRVLGSLAEF VAARGLQMQI GVNIGIAIYP
RDAATSEGLM QAARVSLSEA RESGSNQVRV FNSAAGERAR RTRVIRRDLW PAIQDDGLSL
MFQPKFDVKT RQVVGAEALC RWRHPTLGAV SPVEFIMVAE QSGQIDKLDD WVISRVCGQV
RSWQDAGLPV VPVAINVSGT RFASRNFPRY LLEHIHQHDI PPSAITLEIT ETAAMKDIAK
SLETLAELQS LGIQVALDDF GSGYSSLGYL KRLRVGTLKI DRTLIGGLDA DPQGRAIVGS
MVALAHELRM KVVAEGVESA SQLEILHGMG CDEVQGYLLA VPLDSPGFAD VLHAARPLAV
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