| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3576 |
|---|
| Symbol | |
|---|
| ID | 4040425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 3879620 |
|---|
| End bp | 3880306 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637978994 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_585717 |
|---|
| Protein GI | 94312507 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAC CCCACGACGC CGATCCGGCC GTCACCACCT CCTCCGCCGC ACGCGTATTG
CTGATCGACG ATCACGCACT GGTGCGCGAC GGCATGCGTA TGCACCTGAC GCTGCAGCCG
GGGCTGGAAG TGGTCGGGGA AGCCGACGAT GGCGAGGCCG CGCTGGCGTG GCTGGCGGCG
GCCGAAGCCG GACGCATGCC GGACCTCGTG ATCACCGACA TCGGCATGCG CGGCATGGGC
GGTATTGCCC TGGCGGGCGC CCTGCACGAT CGCTACCCGG AACTGGCAGT GCTGATCGTG
TCGATGCACG ACAACCTGGA ATACGTGCGC CAGGCGATCC GCGCGGGCGC GCGCGGCTAC
GTACTCAAGG ACGCGCCAGC CGATGAGTTA CTGGCGGCGA TCCAGGCAGT GCTGGCGGGA
CGCGTGTTCT ACAGCGCCCG CATCGCGCGT GGCATGGCGG CGCAGGCTGT GAGTCCGCTC
GACGCGCTGA CACCGCGCGA ACGCGACATT CTTCACGGGA TCGGACGCGG ACAGGCCAAC
AAGGACATCG CGGTGCAACT CGGCGTATCG GTGCGCACGG TGGAAACCCA CCGCCTCAAC
CTGAAACGCA AGCTTGGCAT CGAGGGCCGG GCGGAACTGG TGAAGTATGC GGTGCAACAG
CTTGGGCTGG ATGTCGAGGG TGGCTGA
|
|---|
| Protein sequence | MTAPHDADPA VTTSSAARVL LIDDHALVRD GMRMHLTLQP GLEVVGEADD GEAALAWLAA
AEAGRMPDLV ITDIGMRGMG GIALAGALHD RYPELAVLIV SMHDNLEYVR QAIRAGARGY
VLKDAPADEL LAAIQAVLAG RVFYSARIAR GMAAQAVSPL DALTPRERDI LHGIGRGQAN
KDIAVQLGVS VRTVETHRLN LKRKLGIEGR AELVKYAVQQ LGLDVEGG
|
|---|
| |