| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3393 |
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| Symbol | |
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| ID | 4040237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 3667736 |
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| End bp | 3669277 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637978808 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_585534 |
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| Protein GI | 94312324 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.118784 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACCG ATACGCCAGT GACGGCACCC GCCGCGACAG AAACGCCACT CGAAGCCCCG
TCGCCGATGG CGGCGCGGCT GGTCTCGTAC ACGTTCTCGC GCGAAGCACC GCTGCTGATC
GCGCACCAAC GCCCCGACGG ACTCGAAGTC TGGGTCAGCC GCAAGACCTC TCCGGCCGCG
CTGGCCGAGG TGGCGCGCGT GCACGGCGCG TTGCATCTGC GCGTGCTGGA ACAGGCCGAA
CTCGAGGCGG CGATGTCCGA CGCCTATAAC CGCCAGGACG GCACCGCCGC GCAGGTGGTG
GGCGAGGTGG AAGGCGAAGT CGATCTGTCG CGCCTGATGC AGGACATCCC GGCCGTGGAA
GACCTGCTCG AGTCCGAGGA CGATGCGCCA ATCATCCGCA TGATCAATGC GCTGCTGACG
CAGGCCGCGC GCGAGCAGGC TTCCGATATC CACATCGAGC CGTTCGAATC GGCATCGGTC
GTGCGTTTCC GTGTGGATGG CACGCTGCGC GACGTGGTGC GTCCGAAGAA GGCGCTGCAT
GGTGCCCTGA TCTCGCGGAT CAAGATCATG GCGCAGCTCG ACATTGCCGA GAAACGGTTG
CCGCAGGATG GCCGCATCAC GCTACGCGTG GGCGGACGGC CGGTGGACGT GCGCGTATCC
ACGCTGCCGA CCGGACACGG CGAGCGCGCG GTGCTGCGTC TGCTCGACAA GGAAGCGGGC
CGTCTCGATC TGGCCAAGCT CGGCATGGCG CGCTCGACGC TGGGCAGCTT CGATGATCTG
ATTCGCCAGC CACACGGCAT CGTGCTGGTG ACCGGACCCA CGGGCTCGGG CAAGACCACG
ACGTTGTACG CGGCGCTATC GCGGCTGGAC TCCCATACGA CCAACATCAT GACCGTCGAG
GACCCGATCG AATACGATCT CGACGGCATC GGACAGACGC AGGTCAACGC GCGCATCGAC
ATGACCTTCG CGAAGGCCCT GCGCGCGATT CTGCGTCAGG ACCCGGACGT GGTCATGATC
GGCGAAATCC GCGACCTCGA AACCGCGCAG ATCGCGGTGC AGGCTTCGCT GACCGGCCAC
CTCGTGCTGG CCACGCTGCA CACCAACGAT TCAGCCTCAG CCGTAACTCG GCTGGTCGAC
ATGGGCATCG AGCCGTTCCT GCTTTCCTCG TCGCTGATCG GCGTGCTGGC GCAGCGGCTG
GTGCGCCGTC TCTGCCCGCA CTGCAAGCGC GAGGAAGTCA TCGAAGTCAC ACCGGGCGAA
TCCGAGACGC TTCTTGCCGA CGGCAAGCCA CTGCAGCGCG TATGGCACCC GGTTGGTTGC
GACAAGTGCG GAAATTCCGG CTATCAAGGC CGTATGGGTG TGTATGAACT GCTGACTGTC
GATGCCGAAA TCCAGACGAT GATCCACCGC CAGCAGCCCG AGTCCGAGAT CAAGCAACGG
GCGCTGGCCA AGGGCATGCA CACGATGCGC GGTGATGCGC AGCGCTGGAT CGACAGCGGC
GCCACTTCGC TTGAAGAAGT GCTGCGCGTG TCGCGCGACT AG
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| Protein sequence | MATDTPVTAP AATETPLEAP SPMAARLVSY TFSREAPLLI AHQRPDGLEV WVSRKTSPAA
LAEVARVHGA LHLRVLEQAE LEAAMSDAYN RQDGTAAQVV GEVEGEVDLS RLMQDIPAVE
DLLESEDDAP IIRMINALLT QAAREQASDI HIEPFESASV VRFRVDGTLR DVVRPKKALH
GALISRIKIM AQLDIAEKRL PQDGRITLRV GGRPVDVRVS TLPTGHGERA VLRLLDKEAG
RLDLAKLGMA RSTLGSFDDL IRQPHGIVLV TGPTGSGKTT TLYAALSRLD SHTTNIMTVE
DPIEYDLDGI GQTQVNARID MTFAKALRAI LRQDPDVVMI GEIRDLETAQ IAVQASLTGH
LVLATLHTND SASAVTRLVD MGIEPFLLSS SLIGVLAQRL VRRLCPHCKR EEVIEVTPGE
SETLLADGKP LQRVWHPVGC DKCGNSGYQG RMGVYELLTV DAEIQTMIHR QQPESEIKQR
ALAKGMHTMR GDAQRWIDSG ATSLEEVLRV SRD
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