Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_3297 |
Symbol | secY |
ID | 4040132 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 3570664 |
End bp | 3572007 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637978703 |
Product | preprotein translocase subunit SecY |
Protein accession | YP_585438 |
Protein GI | 94312228 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0201] Preprotein translocase subunit SecY |
TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCCACGG CGAAACCCAA TGCAAGCGCG CAGGCCAGGA ACACGGCGAA GTACGGCGAC CTCAAGCGCC GGTTGATGTT CCTGGTGCTG GCTTTGATCG TCTACCGCAT CGGTGCGCAT ATTCCGGTGC CGGGGATTGA TCCGGACCAG CTTGCGAAGC TTTTCCAGTC TCAGTCAGGT GGCATCCTCG GGATGTTTAA CCTGTTCTCG GGCGGTGCGC TGTCGCGCTT TACCGTCTTC GCGCTCGGCA TCATGCCGTA CATCTCGGCG TCGATCATCA TGCAGTTGTT GACGATCGTG CTGCCGCAGT TGGAGTCGTT GAAGAAGGAA GGGCAGGCAG GGCAACGCAA GATTACGCAG TACACGCGTT ACGGCACTGT GGTTCTGGCC ACGTTCCAGG CGCTGTCGAT TGCGGTTGCG CTGGAATCGC AGCCTGGTCT CGTGTTGGAA CCGGGTCTGA TGTTCCGGGC CACGGCGGTG ATCACGCTGG TGACTGGCAC GATGTTCCTG ATGTGGCTGG GTGAACAGAT CACCGAGCGT GGTCTGGGCA ACGGTATCTC GATCATCATC TTTGGCGGTA TCGCGGCGGG CTTGCCCAAT GCGATTGGCG GACTGTTCGA ACTGGTCCGT ACGGGTTCCA TGAGCATCAT CGCGGCGATC TTTATCGTGG CGATCATTGC GGGTGTGACC TTCGCCGTGG TGTTTATCGA GCGTGGCCAG CGCAAGATTC TGGTGAACTA TGCCAAGCGT CAGGTCGGCA ACAAGGTGTA CGGCGGTCAG TCGTCGCATC TGCCGCTGAA GCTGAACATG GCAGGGGTGA TTCCGCCGAT CTTTGCATCG TCGATCATCC TGTTCCCGGC AACGATTGCG GGCTGGTTTA CGTCGGACTC GACGAGTGCG GTGGGTCGGT TCATCAAGGA CCTGGCTGCC ACGCTGTCGC CGGGTCAGCC GGTGTACATC CTGCTGTATG CAACTGCGAT TGTTTTCTTC TGCTTCTTCT ATACGGCTCT GGTGTACAAC AGCCGGGAAG TGGCGGATAA CCTGAAAAAG AGTGGTGCCT TCATTCCGGG CATCCGTCCG GGCGAGCAAA CGACGCGCTA TATCGACAAG ATCTTGGTGC GCCTGACGCT GGCTGGTGCG ATTTACATCA CACTAGTCTG CCTGTTGCCG GAATTCCTGG TGCTGCGCTG GAACGTTCCG TTCTATTTCG GCGGAACCTC GCTGCTGATC ATCGTGGTCG TCACGATGGA CTTCATGGCA CAGGTACAGT CCTACGTCAT GTCGCAGCAG TATGAGTCGC TGCTGAAGAA GGCGAATTTC AAGGGTAACC TGACCTTGCG TTAA
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Protein sequence | MATAKPNASA QARNTAKYGD LKRRLMFLVL ALIVYRIGAH IPVPGIDPDQ LAKLFQSQSG GILGMFNLFS GGALSRFTVF ALGIMPYISA SIIMQLLTIV LPQLESLKKE GQAGQRKITQ YTRYGTVVLA TFQALSIAVA LESQPGLVLE PGLMFRATAV ITLVTGTMFL MWLGEQITER GLGNGISIII FGGIAAGLPN AIGGLFELVR TGSMSIIAAI FIVAIIAGVT FAVVFIERGQ RKILVNYAKR QVGNKVYGGQ SSHLPLKLNM AGVIPPIFAS SIILFPATIA GWFTSDSTSA VGRFIKDLAA TLSPGQPVYI LLYATAIVFF CFFYTALVYN SREVADNLKK SGAFIPGIRP GEQTTRYIDK ILVRLTLAGA IYITLVCLLP EFLVLRWNVP FYFGGTSLLI IVVVTMDFMA QVQSYVMSQQ YESLLKKANF KGNLTLR
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