| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3108 |
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| Symbol | |
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| ID | 4039937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 3367233 |
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| End bp | 3368954 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637978508 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_585249 |
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| Protein GI | 94312039 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.275217 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTAG GCCTCGCGCT TGCCCAGAGC CGGCGGATCG CGCCGGCTCT GCTTGCCCAG
TTGGAGCAAT CGGCCCGGGA AAAGAAGACG CAGCTGATCG ACGAGATCAT TGGCAGCGGC
ACGATGTCCG CCCATGACGT CGCCGTGTTC GCCGCCGACA AGTACCAGCT CCCGCTGCTC
GACCTCTCCG AATACAACCT CAGCCGCGTG CCGTCGGCAC TCTCGGGCAA CCGCGAGTTC
CATGCGCACC GGCTCCTGCC GCTGGGCCGT CGGGAAAACC GCCTGATCGT GGCGATGTCC
GATCCGGCCA ACCAGGCCGG CGTCGACGTG ATCCGCCAGA AGTTCAGCCT GCCAGTGGAA
ACAGTCGTCG TCGAACACGA CAAGCTGATG AAGCATGTCC GATCTGCCGG CGAGGCACTT
GGCACGCTCA AGAACGCCCT GCCGACGCCC ACGGCGCAGA AGATGATCGA GTATGACCCG
GTGGCCGCCG CGAGCGCGCG CAAGGTCCCC GGCGCCAACG ACATCGACGA CGCGCCGGTA
GTGCGCTTCC TGCAGAAGCT GCTGACGGAA GCCTTCCATC GCGGCGCGTC GGACCTTCAC
TTCGAACCAT TCGAGTTCTT CTACCGCATT CGCTTCCGCG TGGACGGCGT GCTGCAGGAA
GTCGCGCGGC CACCGCTCGA TATCCGCGAC AAGATCGCCA CGCGTATCAA GGTGCTATCG
CGCCTGGACA TCTCGGAAAA GCGTGTGCCG CAGGACGGCC GGATGAAGCT ACTGATCTCC
ATGCCGAAAG ACAAGGACGG CAAGGAGACC GTCGACAAGG CGATCGACTT CCGCGTCTCC
ACGCTGCCCA CGTTGTTCGG CGAAAAGATC GTGATGCGGA TTCTCGATTC GTCGAGCGAC
AAGCTCGACA TCGACCAACT CGGCTATGAG CCGCAGCAGA AGGCACTGCT GCAGGAAGTG
ATCAAGCGGC CGTACGGGAT GGTGCTGGTG ACTGGCCCGA CCGGCAGCGG CAAGACTGTG
TCGCTCTATA CGTTCCTGAA CATGCTGAAC CAGGGCGACA TCAATATCTC GACCGCCGAG
GATCCGGCCG AAATCCAGTT GCCCGGCATC AACCAGGTCA ACGTGAACGA CAAGGCCGGC
CTGACCTTCG CCGCCGCGCT GAAATCGTTC CTGCGCCAGG ATCCCGACGT GATCATGGTC
GGCGAAATTC GTGACCTCGA GACGGCCGAC ATCTCCATCA AGGCCGCGCA GACCGGTCAC
CTGGTGCTGT CCACGCTGCA CACGAACGAC GCGCCGACCA CGCTGACACG CCTGATGAAT
ATGGGCGTGG CACCGTTCAA CATCGCCTCG TCGGTCCTGC TGATCACCGC GCAGCGCCTG
GCGCGCCGGC TTTGCACCTG CAAGCGCGAG GGCGACCTGG CACCGCAGGT GCTGATCGAT
GCAGGCTTCC AGGAGTCAGA CCTCGACGGC ACATGGAAGC CCTATCACCC GGTGGGCTGC
GACCGATGCA GCGGTAGTGG CTACAAGGGG CGATGCGGTA TCTACCAGGT CATGCCGATT
ACCGAAACCA TTCAACAGAT CATCCTGTCG CACGGCACGG CATTGCAGAT TGCTGAACAG
GCGCGCAAGG AAGGCGTGCT ATCGTTGCGG GAAGCTGGCC TGCTCAAGGT CAAACAGGGC
GTCACGTCAC TCGAAGAAGT GCTGGCGACC ACGAACACGT AA
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| Protein sequence | MTLGLALAQS RRIAPALLAQ LEQSAREKKT QLIDEIIGSG TMSAHDVAVF AADKYQLPLL
DLSEYNLSRV PSALSGNREF HAHRLLPLGR RENRLIVAMS DPANQAGVDV IRQKFSLPVE
TVVVEHDKLM KHVRSAGEAL GTLKNALPTP TAQKMIEYDP VAAASARKVP GANDIDDAPV
VRFLQKLLTE AFHRGASDLH FEPFEFFYRI RFRVDGVLQE VARPPLDIRD KIATRIKVLS
RLDISEKRVP QDGRMKLLIS MPKDKDGKET VDKAIDFRVS TLPTLFGEKI VMRILDSSSD
KLDIDQLGYE PQQKALLQEV IKRPYGMVLV TGPTGSGKTV SLYTFLNMLN QGDINISTAE
DPAEIQLPGI NQVNVNDKAG LTFAAALKSF LRQDPDVIMV GEIRDLETAD ISIKAAQTGH
LVLSTLHTND APTTLTRLMN MGVAPFNIAS SVLLITAQRL ARRLCTCKRE GDLAPQVLID
AGFQESDLDG TWKPYHPVGC DRCSGSGYKG RCGIYQVMPI TETIQQIILS HGTALQIAEQ
ARKEGVLSLR EAGLLKVKQG VTSLEEVLAT TNT
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