Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_3088 |
Symbol | |
ID | 4039916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 3343511 |
End bp | 3346450 |
Gene Length | 2940 bp |
Protein Length | 979 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637978487 |
Product | ribonucleotide-diphosphate reductase subunit alpha |
Protein accession | YP_585229 |
Protein GI | 94312019 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0209] Ribonucleotide reductase, alpha subunit [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAACGG CCCAAAACGA ACAACAAACC ACTGGCGTGA CTGGCGTTGC TGGCGCAGCA GCCGGCATTG CGCAGCAGAG CCCCGTCGCT GCAGGCGTTA CCTATCAGGA CTACAAGCTG ATCCGCCGTA ACGGCGCCGT GGTGTCGTTC GAGCCGAACA AGATTGCCGT GGCCATGACC AAGGCATTCC TGGCCGTCAA CGGCGGCCAG GGCGCGGGAT CCGCGCGCGT GCGCGAGATC GTCGAGCAAC TGACCCAGAA TGTGGTGCGC GCGCTGGTGC GCAGCCGTCC GAACGGCGGC ACGTTCCATA TCGAAGACGT GCAGGATCAC GTGGAACTGG CGCTGATGCG CTCGGGCGAA CATGAGGTGG CCCGCGCCTA CGTGCTGTAC CGCGAAAAGC GCACGCAGGA ACGTGCCCAG GCCAACGCGC AGGCGGTGGC CCGCGTGCAG GAAGCCGGCG TGTCGTTCAA CGTGACCGAT AACGGTGTGA CGTACCAGCT GGACTTGGTG GCGCTGCACG CGCTGATCGA CAACGCCTGC AGCGGCCTCG GCAAGGCCGT CAGCGCAGAG CCGATCCTGA AGGAAACGCT CAAGAACCTG TACGACGGCG TGCCGATGAC GCAGGTCTAC GACTCCGCCA TCCTGGCCGC GCGCACGCTG ATCGAGAAGG ACCCGGCCTA CAGCCAGGTG ACCGCCCGTA TCCTGCTGCA CACGATCCGC AAGGAAATCC TGGGCGCCGA AGTGACCCAG ACCGAGATGG CGACGAAGTA CGCCGAGTAC TTCCCGAAGT TCATCGCCCG CGGTATCGAA GCCGAACTGC TCGACGAAAA GCTGGCCACG TACGACCTGG CCCGCCTGGG CGCCGCGCTG GACGCCTCGC GCGACTTCCA GTTCAACTAC CTGGGCCTGC AGACGCTGTA CGACCGCTAC TTCCTGCACG TGGACGAAGT GCGCATCGAA ATGCCGCAGG CGTTCTTCAT GCGCGTGGCC ATGGGCCTGG CGCTGGAAGA GAAGGACCGT GAAGCGCGCG CGATCGAGTT CTACCAGCTG CTGTCGTCGT TCGACTTCAT GTCGTCGACC CCGACGCTGT TCAACTCGGG CACGCGCCGC TCGCAGCTGT CGTCGTGCTA CCTGACCACG GTCTCGGACG ACCTGGAGGG CATCTACGAG GCGCTCAAGG AAAACGCGCT GCTGTCGAAG TTCGCTGGCG GACTGGGCAA CGACTGGACC AACGTGCGCG CGCTGGGCTC GCACATCAAG GGCACCAACG GCAAGTCGCA GGGCGTGGTG CCGTTCCTGA AGGTGGTCAA CGACACGGCC GTGGCCGTGA ACCAGGGCGG CAAGCGCAAG GGCGCGGTCT GCGCGTACCT GGAAACGTGG CACCTGGACA TCGAGGAATT CCTCGAACTG CGCAAGAACA CCGGCGATGA CCGCCGCCGC ACGCACGACA TGAACACGGC CAACTGGATT CCGGACCTGT TCATGAAGCG TGTGATGGAA AATGGCGAAT GGACGCTGTT CTCGCCGGCC AGCTGCCCGG ACCTGCATGA CAAGGTCGGC AAGGCATTCG AGCAGGCCTA CCTGGGCTAC GAAGCCAAGG CCGCCAACGG CGAACTGAAG CTGTTCAAGA AAGTGCCGGC CATGCAGCTG TGGCGCAAGA TGCTGGGCAT GCTGTTCGAA ACCGGCCATC CGTGGATCAC GTTCAAGGAC CCGTGCAACA TCCGCAGCCC GCAGCAGCAC GTGGGTGTGG TGCATAGCTC GAACCTGTGC ACGGAAATCA CGCTGAACAC GAACGAGAGC GAAATCGCCG TGTGCAACCT GGGTTCCGTG AACCTGGTGG CCCACCTGAT GCAACAGGCC GATGGCACGT ACGTGCTGGA TCACGCCAAG CTGCAGAAGA CGATCCGCAC CGCGATGCGC ATGCTCGACA ACGTGATCGA CATCAACTAC TACGCGGTGG AGAAGGCGCG CAACTCGAAC CTGCGCCACC GTCCGGTGGG CATGGGCATC ATGGGCTTCC AGGACTGCCT GCACGTGCTG CGCACGCCGT ACGCCAGCGA CGCCGCGGTG AAGTTCGCCG ATACGTCGAT GGAAGCCGTG TGCTACTACG CCTACCAGGC GTCGACCGAG CTGGCCGAAG AGCGTGGCCG TTACAGCACC TACGAGGGTT CGCTGTGGGA TCGTGGCATC CTGCCGCAGG ATTCGCTGAA GCTGCTGGCC GAAGAACGTG GCGGCTACCT GGACGTCGAC CTGTCGTCGA CGATGGACTG GGACAGCCTG CGCGGTCGCA TCAAGCAGCA CGGCATGCGC AACTCGAACT GCATCGCGAT CGCCCCGACC GCGACCATTT CGAACATCAT CGGCGTGTCC GCCTGCATCG AGCCGACGTT CCAGAACCTG TACGTGAAGT CGAACCTCTC GGGCGAGTTC ACGGTAGTGA ACGACTACCT CGTGCGCGAC CTGAAGGAAC GCGGCCTGTG GGATGAAGTG ATGGTCGCCG ACCTGAAGTA CTTCGACGGC TCGCTGGCCC GCATCGACCG CATTCCGCAG GACCTGCGGG ACATTTACGC CACGGCGTTC GAAGTGGAAC CGACCTGGCT CGTGGAAGCC GCCAGCCGCC GTCAGAAGTG GATCGACCAG GCCCAATCGC TGAACATCTA CATGGCCGGC GCTTCGGGCA AGAAGCTGGA CGACACCTAC AAGCTGGCCT GGCTGCGTGG TCTGAAGACC ACGTACTACC TGCGCACGAT GGCTGCCACG CACGTGGAGA AGTCCACCGT GCAGCGCGGT TCGCTGAACG CGGTGTCGTC GGGCGCCGAC GGCCAGTCGG GCATCGATGC TGCCGCGTCG GCTGCACCGG CGATGCCGGA GGCCGAGGGC GCGGTCTGCA CGATGCGTCC GGGCGATCCT GGCTTCGAAG AGTGCGAAGC CTGCCAGTAA
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Protein sequence | MQTAQNEQQT TGVTGVAGAA AGIAQQSPVA AGVTYQDYKL IRRNGAVVSF EPNKIAVAMT KAFLAVNGGQ GAGSARVREI VEQLTQNVVR ALVRSRPNGG TFHIEDVQDH VELALMRSGE HEVARAYVLY REKRTQERAQ ANAQAVARVQ EAGVSFNVTD NGVTYQLDLV ALHALIDNAC SGLGKAVSAE PILKETLKNL YDGVPMTQVY DSAILAARTL IEKDPAYSQV TARILLHTIR KEILGAEVTQ TEMATKYAEY FPKFIARGIE AELLDEKLAT YDLARLGAAL DASRDFQFNY LGLQTLYDRY FLHVDEVRIE MPQAFFMRVA MGLALEEKDR EARAIEFYQL LSSFDFMSST PTLFNSGTRR SQLSSCYLTT VSDDLEGIYE ALKENALLSK FAGGLGNDWT NVRALGSHIK GTNGKSQGVV PFLKVVNDTA VAVNQGGKRK GAVCAYLETW HLDIEEFLEL RKNTGDDRRR THDMNTANWI PDLFMKRVME NGEWTLFSPA SCPDLHDKVG KAFEQAYLGY EAKAANGELK LFKKVPAMQL WRKMLGMLFE TGHPWITFKD PCNIRSPQQH VGVVHSSNLC TEITLNTNES EIAVCNLGSV NLVAHLMQQA DGTYVLDHAK LQKTIRTAMR MLDNVIDINY YAVEKARNSN LRHRPVGMGI MGFQDCLHVL RTPYASDAAV KFADTSMEAV CYYAYQASTE LAEERGRYST YEGSLWDRGI LPQDSLKLLA EERGGYLDVD LSSTMDWDSL RGRIKQHGMR NSNCIAIAPT ATISNIIGVS ACIEPTFQNL YVKSNLSGEF TVVNDYLVRD LKERGLWDEV MVADLKYFDG SLARIDRIPQ DLRDIYATAF EVEPTWLVEA ASRRQKWIDQ AQSLNIYMAG ASGKKLDDTY KLAWLRGLKT TYYLRTMAAT HVEKSTVQRG SLNAVSSGAD GQSGIDAAAS AAPAMPEAEG AVCTMRPGDP GFEECEACQ
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