Gene Rmet_2946 details

Gene Information

• Locus tag: Rmet_2946
• Symbol: secD
• ID: 4039774
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cupriavidus metallidurans CH34
• Kingdom: Bacteria
• Replicon accession: NC_007973
• Strand: +
• Start bp: 3202051
• End bp: 3203916
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637978346
• Product: preprotein translocase subunit SecD
• Protein accession: YP_585088
• Protein GI: 161621301
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 49
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAATCGTT ATCCGATTTG GAAATACATC GTGATTCTGG TGGCTCTGGC CATCGGCATC 
ACCTACACCA TGCCGAACTT CTTCGGCGAG GCGCCCGCCG TCCAGGTATC GTCGGCCAAG 
GCCACGGTCA AGGTCGACCT GTCCATGCAG AAGCATGTCG AGGAGATCCT GGCGCAGAAC 
CAGCTGCAGC CTGACGGGGT GTTCTTCGAC GTGTCCGGCC AGTCCGGCTC GGTCAAGGCG 
CGCTTCCGCA CCACTGACGA GCAGCTCAAG GCCAAGGACG TGCTGTCGCG CTCGCTGAAC 
CCCGACGCGA ACGATGCGAC CTATGTCGTG GCGCTGAACC TGCTGTCCGG TTCGCCGCGC 
TGGCTGACCG CGCTGCACGC GCTGCCCATG TACCTGGGTC TGGATCTGCG CGGTGGCGTG 
CACTTCCTGC TACAGGTGGA CATGAAGGGC GCCGTCGACA AGAAGCTCGA CAGCCTGGCC 
GGCGATGCGC GCACGCTGCT GCGCGACAAG AACATCCGCC ACGGCGGCAT TGACCGTGAC 
GGCGAGCGTC TGACCGTGCG CTTCAGCAAT GGCGACGACG CGGAACGCGC GCGCGGCATC 
CTGGCCGACA ACCTGCGCGA GCTGGCCTTC ACGATGGACG GCACGAACAT CGTCGGCACG 
TTCACGGAAG CCGCCCGCAA GACCGTGCAG GACGGCGCCG TCAAGCAGAA CATCACCACC 
CTGCACAATC GTGTGAACGA ACTTGGCGTG GCAGAGCCGG TGATCCAGCA GCAAGGCTCC 
GACCGCATTG TGGTGCAGCT GCCGGGCGTG CAGGACACCG CCAAGGCCAA GGACATCATC 
GGCCGTACCG CCACGCTCGA GGCGCGCCTG GCCGATCCGG ATGTGCGCAA CCCGCGCCCG 
GGTGACCCCG TGCCGTTCGG CGACGAGCTG TTCACGCAAG GCAACAGCGC CCCGGTGCTG 
CTGCGCAAGC AGGTGATCTT CACCGGCGAC CGTATCGAAA GCGCCTCGGC CGGTTTCGAC 
CAGAACCAGC GCCCGTCCGT CAACATCAAG CTCGACGCCC AAGGCGGCCG CATGCTGCGT 
GACGTGTCGC GGGAGAACAT TGGCAAGCCG ATGGGCATCG TCCTGTTCGA GAAGGGCAAG 
GGCGAAGTGC TGACTGTGGC GACGATCCAG TCCGAGCTTG GCTCGAGCTT CCAGATCACC 
GGTTCTTACT CGACCGAAGC CGCCAACGAC CTGGCCCTGC TGCTGCGCGC CGGCTCGCTG 
GCCGCCCCGA TGGAAATCAT CGAGGAACGC ACAATCGGCC CGTCGCTGGG CGCGGACAAC 
ATCCAGAAGG GCTTTGACTC GGTGGCCTAC GGCTTCGCCG CGATCGCCGT CTTCATGGTG 
CTGTACTACA TGCTGTTCGG CGTGTTCTCC GTGATCGCGC TGGGCGTGAA CCTGCTGCTG 
CTGGTGGCGG TGCTGTCGAT GCTGCAGGCC ACGCTGACGC TGCCTGGCAT CGCCGCTATC 
GCGCTGGTGC TCGGCATGGC CATCGACGCG AACGTGCTGA TCAACGAGCG GATCCGCGAG 
GAACTGCGCG CGGGCGCATC GCCGCAGATG TCGATCGCCA TCGGCTTCGA GCGTGCCTGG 
GCCACGATTC TCGACTCGAA CGTGACCACG CTGATCGCTG GCCTGGCGCT GCTGGCCTTT 
GGCTCGGGCC CGGTGCGCGG CTTTGCCGTG GTGCACTGCC TGGGCATTCT GACCTCGATG 
TTCTCGGCGG TGTTCTTCAA CCGCGGCCTG GTCAACCTTT GGTACGGCCG CAAGAAGAAG 
CTCCAGGGCT TGGCCATCGG TCAGATCTGG AAGCCGGACA CCACCGACAC CCCGGTCGCC 
AAGTAA 

 

Protein sequence

MNRYPIWKYI VILVALAIGI TYTMPNFFGE APAVQVSSAK ATVKVDLSMQ KHVEEILAQN 
QLQPDGVFFD VSGQSGSVKA RFRTTDEQLK AKDVLSRSLN PDANDATYVV ALNLLSGSPR 
WLTALHALPM YLGLDLRGGV HFLLQVDMKG AVDKKLDSLA GDARTLLRDK NIRHGGIDRD 
GERLTVRFSN GDDAERARGI LADNLRELAF TMDGTNIVGT FTEAARKTVQ DGAVKQNITT 
LHNRVNELGV AEPVIQQQGS DRIVVQLPGV QDTAKAKDII GRTATLEARL ADPDVRNPRP 
GDPVPFGDEL FTQGNSAPVL LRKQVIFTGD RIESASAGFD QNQRPSVNIK LDAQGGRMLR 
DVSRENIGKP MGIVLFEKGK GEVLTVATIQ SELGSSFQIT GSYSTEAAND LALLLRAGSL 
AAPMEIIEER TIGPSLGADN IQKGFDSVAY GFAAIAVFMV LYYMLFGVFS VIALGVNLLL 
LVAVLSMLQA TLTLPGIAAI ALVLGMAIDA NVLINERIRE ELRAGASPQM SIAIGFERAW 
ATILDSNVTT LIAGLALLAF GSGPVRGFAV VHCLGILTSM FSAVFFNRGL VNLWYGRKKK 
LQGLAIGQIW KPDTTDTPVA K