| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2436 |
|---|
| Symbol | |
|---|
| ID | 4039258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 2644612 |
|---|
| End bp | 2645775 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637977834 |
|---|
| Product | peptidase S49 |
|---|
| Protein accession | YP_584582 |
|---|
| Protein GI | 94311372 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAC AGCAAAATCC GCCGAACGAA CCGGGTCAAC CGCAAGAGCG CGCGGGCGAC
GACAGCAAGC TGGAGACGGC AAAGCACGCC GAATTCCCGC TGGAGCGGGA ACTGCAGGCT
GGCGACGACG CGGCCAAGCG CGAAGCCGAC GAGCGGCGCG CCCGCCTGGC AGGCAAGGGC
GGTCCGGTTG GTGGCAGCAG CGGCAGCGGT GGTGGCAGTG GTAGTGGCGG CTGGGAGCGC
GACGTGCTCG AGAAGGTGCT GATGGCCTCC CTGCGCGAGC AGCGCTCGGC GCGACGCTGG
AAGATCTTCT TCCGCTTTCT TACCCTCGCC ATCGTTGCAC TGATTCTCTA CGCGGTGATC
GACTTCAAGG GGGATGTGCT GAGTTCGACG AGCGGTCGCC ATACCGCCAT GGTCACGCTC
GACGGCGAAA TTGCCGCCGG CACCACGGCC AGCGCGGACT CTATCAACGC CGCGCTTCAG
GCGGCCTTCG AGGACACATC GGCAGCTGGC GTGATCCTGA AGATCAACTC GCCAGGCGGC
TCGCCGGTAC AGGCCGGCAT CATCAACGAC GAGATTCACC GCCTGCGCAA GCTGTATCCG
GACAAGCCGT TCTACGTGGT GGTCGAGGAA ATCTGCGCAT CTGGCGGCTA TTACGTGGCC
GCCGCAGCCG ACAAGATCTA TGTCGACAAG GCCAGTATTG TTGGGTCGAT CGGCGTGCTG
ATGGATGGCT TTGGCTTTAC GGGCCTGATG GACAAGGTCG GCGTCCAGCG CCGCCTGTAC
ACGTCAGGCG CCAATAAGGG CATGCTCGAT CCGTTCTCGC CGGAAGTGCC ACGCCAGAAG
GGCTACGCGG AGTCCATGCT CAAGGAGATC CACCAGCAGT TCATCGACGT GGTGAAGGAA
GGTCGTGGCG ATCGGCTCAA GAACGATCCC GAACTGTTCT CGGGGCTCTT CTGGTCGGGT
GAGCGCGCTG TGGAGCTTGG GCTGGCCGAT GGCCTGGGTA GCGCGGACTA CGTGGCCCGG
GACCTGTTCA AGGCCGAGGA CATCGTCGAC TACACGGTCA AGGAGAACAT CGCCGAACGC
ATGGCCAAGC GCTTCGGCGC GGCCGCTGGA TCGGCGGCGA TGAAGTTGAT GATGATGAGT
GCAACCGTGC CTTCGGTGCG GTAA
|
|---|
| Protein sequence | MTEQQNPPNE PGQPQERAGD DSKLETAKHA EFPLERELQA GDDAAKREAD ERRARLAGKG
GPVGGSSGSG GGSGSGGWER DVLEKVLMAS LREQRSARRW KIFFRFLTLA IVALILYAVI
DFKGDVLSST SGRHTAMVTL DGEIAAGTTA SADSINAALQ AAFEDTSAAG VILKINSPGG
SPVQAGIIND EIHRLRKLYP DKPFYVVVEE ICASGGYYVA AAADKIYVDK ASIVGSIGVL
MDGFGFTGLM DKVGVQRRLY TSGANKGMLD PFSPEVPRQK GYAESMLKEI HQQFIDVVKE
GRGDRLKNDP ELFSGLFWSG ERAVELGLAD GLGSADYVAR DLFKAEDIVD YTVKENIAER
MAKRFGAAAG SAAMKLMMMS ATVPSVR
|
|---|
| |