Gene Rmet_2028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_2028 
Symbol 
ID4038835 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp2193553 
End bp2195166 
Gene Length1614 bp 
Protein Length537 aa 
Translation table11 
GC content62% 
IMG OID637977413 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_584176 
Protein GI94310966 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0715517 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.28108 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGATT CCATCACCAC AGTGCCGGAT TCCGGCGCGG CTCCGGCCCC AAAGCCGAAG 
CCAGCGCCAG CCCGGCATGC CGCGCCCCCT CCGCTGACGG GCGGCAAGCT CGTCATTGGC
ACCATCGCCC TGTCGCTGGC TACGTTCATG AACGTGCTCG ACTCGTCGAT CGCCAACGTG
TCGATCCCGG CCATCTCGGG CGACCTCGGC GTGTCGCCGA ACCAGGGCAC CTGGGTCATC
ACGTCGTTCG CCGTCGCCAA CGCTATTTCA GTGCCGCTGA CGGGCTGGCT GACCACGCGT
TTCGGTGCCG TGCGATTGTT CGTGCTGTCG ATCTTGCTGT TCGTGCTCTC GTCCTGGCTG
TGCGGCGTGG CGCCGAACCT GGAGACGCTG CTGGCCGCGC GCGTGCTGCA AGGCGCCGTA
GCCGGGCCGA TGATCCCACT GTCGCAGTCG CTGCTGCTGG CCAGCTATCC GGTTGCCAAG
AGTTCGATGG CGCTGGCGCT ATGGGGCATG ACCACACTCG TAGCGCCGAT CATGGGCCCC
CTGCTTGGCG GCTGGATCTC CGACAACATG ACATGGCCGT GGATCTTCTA TATCAACGTG
CCGATCGGCA TCATGACCGC GTATGCCACA TGGGCAATCT ATCGTGATCG CGAAACACCC
ACGAAGATCC TGCCAATCGA CCGCATCGGC CTGGCTCTCC TCGTGATCTG GGTGGGGTCG
ATGCAGCTCA TGCTCGACAA GGGCAAGGAA CTCGACTGGT TCCATTCCTC GATCATCGTG
ACGCTGACGG TGGTGGCGGT AGTCGGATTC CTGTTCTTCC TGATCTGGGA GAACTATGAG
AAGCACCCGA TCGTCGACAT TCACCTGTTC AAGGGACGCA ACTTCGCCGC AGGCGTGGTG
GCAATCTCCG TGGCGTACGG GCTGTTCTTC GGCAACCTGG TGATTCTGCC GCTGTGGCTG
CAGACCATCA TCGGCTACAC CGCGACGGAC GCCGGTCTGG TGATGGCGCC AGTGGGGATC
TTCGCGATCA TCCTGTCGCC AATCATCGGT CGCATCCTGC CGAAGGTCGA CTCTCGCTGG
GTGGCAACCG CTGCGTTTAT TACGTTTGGC GTGGTCAGTT TCATGCGTGC TGGCTTTACC
ACAACCGTTG ATACGCGCGC GCTGATCATC CCTACGCTGA TACAGGGCGC CGCAATGGCA
ATGTTCTTCA TCCCGCTGAC GTCAATCATC CTGTCCGGCC AGCCGGCCGA GAAGATCCCG
GCGGCTTCCG GTTTGTCGAA CTTTGTACGG ATCACGTTCG GCGCGATCGG CGCTTCGATC
TCGACGACGA TCTGGGAGAA CCGCTCGGCG CTGCACCATG CCCAGTTGGT CGAACAGATC
AATCCGTATA ACCCGACGTA CCAGGCACAG CTCGACCACC TGATGTCGAT GGGGATGAAC
CGGATGCAGG CGATCGGCCT GATGGAGCGA AATATCTCGC AGCAGGCATC TATGCTCGGC
GCCAACGACA TCTTCTGGAT TTCCGGCGTG CTGTTCTTCG TGCTGATCGG CTTCGTCTGG
CTGACCAAGC GCGCCAAGGG CGGCGGCGGC GCGGAAGCAG CCGGAGCGCA CTGA
 
Protein sequence
MADSITTVPD SGAAPAPKPK PAPARHAAPP PLTGGKLVIG TIALSLATFM NVLDSSIANV 
SIPAISGDLG VSPNQGTWVI TSFAVANAIS VPLTGWLTTR FGAVRLFVLS ILLFVLSSWL
CGVAPNLETL LAARVLQGAV AGPMIPLSQS LLLASYPVAK SSMALALWGM TTLVAPIMGP
LLGGWISDNM TWPWIFYINV PIGIMTAYAT WAIYRDRETP TKILPIDRIG LALLVIWVGS
MQLMLDKGKE LDWFHSSIIV TLTVVAVVGF LFFLIWENYE KHPIVDIHLF KGRNFAAGVV
AISVAYGLFF GNLVILPLWL QTIIGYTATD AGLVMAPVGI FAIILSPIIG RILPKVDSRW
VATAAFITFG VVSFMRAGFT TTVDTRALII PTLIQGAAMA MFFIPLTSII LSGQPAEKIP
AASGLSNFVR ITFGAIGASI STTIWENRSA LHHAQLVEQI NPYNPTYQAQ LDHLMSMGMN
RMQAIGLMER NISQQASMLG ANDIFWISGV LFFVLIGFVW LTKRAKGGGG AEAAGAH