Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1686 |
Symbol | |
ID | 4038489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 1825603 |
End bp | 1827153 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637977068 |
Product | RND efflux system outer membrane lipoprotein NodT |
Protein accession | YP_583836 |
Protein GI | 94310626 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.108559 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATGGC TACCACGCAT GTCACTTGCC TTTGCCAGAG AGTTACTCAT CAAGCGTCAA ATCTCACGTC GCGGACCTGC CGCGGCACTG ATAGTCGTCC CGATCCTGCT TGGCGGCTGC ATCTCGATGG ATCCCGCCTA CGAGCGTCCT GCTGCACCGG TGCGGACCAC GTGGTCGCCA GATGCCGCGG CGCCGGCCAT CACGCCAGCC GCCACAATAG GCTGGCGCGA GTTCTACGCG GACCCCGAGC TTCAGGCACT GATCGGACAA GCGCTCGACA ACAACCGGGA CTTGCGCATC GGCGCCGCGC GTGTCGCGCA ATCGCTTGCT GCCTACGGCA TTCAGCGGGC GGAGCAATAC CCGTGGATCG GTGCATCCGC CGATGGAACC CGAGCTCGGG TACCCGGTGA TCTGAATCTG ACTGGTCGAC CTCTAATAAG CAGCCAATAT CAAGTTGGCG TTGGACTCAG CACGTGGGAG ATCGATTTCT GGGGACGTAT TCGCAGTCTC AAGGACGCCG CCTTGCAGAA CTATCTGGCG TCCGATGCTG CGCAACGGGC TGTCACACTG TCGATCATCA CGCAGGTGGC GCAGACGTAT CTGGCCATTC GCGAGCTCGA CGAACGGATC GCTCTGGCAA AGCAGACCAC GGACACCCGG GCCGAATCGC TGCGTATCTT CACGCGCCGG GAACAAGTCG GTTCCGCATC CAAGCTGGAG CTGACCGAAG TCATCACCCT TTACCAGCAG GCCCGGGCAC TGGTCACCCA ACTCGAACAG GACCGCGCCA CACAGTCTCA TGCGCTGGAG GTTCTGGTGG GCGCGCCGGT CGACGTCAAG CCGGCCATCG GCCTGGTCAA CGATGCCGAA CTGATGCGCC AGATCGACGC TGGCCTGCCA TCCGAGCAAC TGGAGAACCG CCCCGACATC GTCTCGGCCG AGCACCAGTT GATGGCTGAA AACGCAAACA TCGGGGCTGC GCGCGCGGCG TTCTTCCCGC GAGTGACCCT GACCGGTTTC GCCGGCACGG CCAGTGCGGA CCTGGATGGT CTGTTCCGTG GAGGCAGTGG CGTATGGTCC TTCGCCCCAA GCATTTCCAT TCCGATCTTC CAGGGCGGAC AGTTGCGTAG CAACCTCGAC CTCGCGAAAG CGCGGCGCGT GGAGGCGGTA GCCCAATACG AGAAAACCAT CCAGAATGCT TTCCGCGATG TGGCCGATGC CCTGAGCGCG CAGCGCTGGC TGGCCGAACA GGTCGATATT CTGCAACTCA CACAGGCGGC ACAGGCCGAA CGCCGGCGAC TGGCGAAACT GCGGTACGAC AATGGTGCAG CAGCCTTCCT CGAAGTCCTC GATGCCGAGC GCGATCTGCT TGCCATCGAG CAACAGGCCG TCCAATCGCG CCGCGCCCTG CTTGCCAGCC GCGTCAGCCT GTATGCCGCA CTGGGCGGTG GCACAGCCGT TGCCTCGCCG CCGGAGGCGG CCGCTCCGGA AGGTGCGCCC GCCAGTGCAG CGCCTGACGC CAAGCCCTCC ACACCTTCTA CTGCTCGTTA A
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Protein sequence | MEWLPRMSLA FARELLIKRQ ISRRGPAAAL IVVPILLGGC ISMDPAYERP AAPVRTTWSP DAAAPAITPA ATIGWREFYA DPELQALIGQ ALDNNRDLRI GAARVAQSLA AYGIQRAEQY PWIGASADGT RARVPGDLNL TGRPLISSQY QVGVGLSTWE IDFWGRIRSL KDAALQNYLA SDAAQRAVTL SIITQVAQTY LAIRELDERI ALAKQTTDTR AESLRIFTRR EQVGSASKLE LTEVITLYQQ ARALVTQLEQ DRATQSHALE VLVGAPVDVK PAIGLVNDAE LMRQIDAGLP SEQLENRPDI VSAEHQLMAE NANIGAARAA FFPRVTLTGF AGTASADLDG LFRGGSGVWS FAPSISIPIF QGGQLRSNLD LAKARRVEAV AQYEKTIQNA FRDVADALSA QRWLAEQVDI LQLTQAAQAE RRRLAKLRYD NGAAAFLEVL DAERDLLAIE QQAVQSRRAL LASRVSLYAA LGGGTAVASP PEAAAPEGAP ASAAPDAKPS TPSTAR
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